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MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.

MetaPhlAn 3.1

You can find here the wiki for the latest version (version 3.1) of MetaPhlAn.

MetaPhlAn 3.0

You can find here the wiki for the 3.0 version of MetaPhlAn.

MetaPhlAn2

A wiki for the previous version MetaPhlAn2 is available here