Access to a resource of datasets with biological ground truth for benchmarking differential abundance methods. The datasets are available from Zenodo: https://doi.org/10.5281/zenodo.6911026
## Install BioConductor if not installed
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## Release version (not yet in Bioc)
BiocManager::install("MicrobiomeBenchmarkData")
## Development version
BiocManager::install("waldronlab/MicrobiomeBenchmarkData", build_vignettes = TRUE)
- Data on Zenodo: https://doi.org/10.5281/zenodo.6911026
- R package on Bioconductor: https://bioconductor.org/packages/release/data/experiment/html/MicrobiomeBenchmarkData.html
- R package source code: https://github.com/waldronlab/MicrobiomeBenchmarkData
- R package issues: https://github.com/waldronlab/MicrobiomeBenchmarkData/issues
- Scripts for preparing the datasets: https://github.com/waldronlab/MicrobiomeBenchmarkDataPrep
- Code for reproducibility of the analyses: https://waldronlab.io/MicrobiomeBenchmarkDataAnalyses