bioinf/dna_compression
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Put your *.fastq file to data directory and use compress.py script to split and squeeze it: $ mv /tmp/ERR001268.filt.fastq ../data/ $ python compress.py ../data/ERR001268.filt.fastq All temporary files will be created in ../data/ One can use "test.py" script for automated testing. For this write file "test.lst" like here ## Filename Quick flag cond_huffman ../data/tmp2.tmp True True ../data/tmp2.tmp True False ../data/tmp.tmp True False ../data/ERR001268.filt.fastq False True and run "test.py" for testing or "test.py -q" for quick testing.