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v0.0.5 - Updated hashing

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@BertBog BertBog released this 27 Oct 08:12
· 23 commits to main since this release
v0.0.5
aa04508

IMPORTANT: The hashing algorithm changed, all existing indices will need to be recreated using mist index!

Changes

  • Hashes are now computed using SHA-1 on the lowercase allele sequence in forward-strand orientation. Thanks to Ryan Wick and Jane Hawkey for the helpful discussions and feedback on the output!
  • Extended the TSV output see the Wiki for more info
  • Added additional test cases for edge cases of allele detection (e.g., alleles located at the edge of a contig)
  • Added a helper script to extract partial LIN-codes
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