Single-cell trajectory inference engine for pseudotime ordering, RNA velocity analysis, and cell fate decision mapping.
- Pseudotime ordering along differentiation trajectories
- RNA velocity estimation from spliced/unspliced ratio
- Multi-lineage branching point detection and entropy scoring
- Cell fate probability computation across lineages
- Gene expression dynamics along pseudotime visualization
2000 cells × 500 genes; 3 lineages; Branch entropy=1.099; Spliced/unspliced=1.033
pip install numpy scipy matplotlib
python trajectory_inference_engine.pytrajectory-inference, pseudotime, rna-velocity, cell-fate, differentiation