BioThings v1.0.0 release

What's Changed

• BioThings v0.12.5 by @ctrl-schaff in #349
• Merger storage generalization by @ctrl-schaff in #348
• Add slack config for pytest. by @everaldorodrigo in #350
• Fix Unlisting Logic in Dataload Utils by @DylanWelzel in #352
• Improve index error messaging by @ctrl-schaff in #351
• Hide cloud credentials when finding snapshots by @DylanWelzel in #354
• PostgreSQL Collection by @DylanWelzel in #359
• Snapshot Cleanup by @DylanWelzel in #355
• Bugfix cli table space by @ctrl-schaff in #362
• Correct our command-line web-app find API call by @ctrl-schaff in #366
• jmespath exclude_empty fix by @DylanWelzel in #372
• Apply black formatting to the main repository base by @ctrl-schaff in #374
• Update our CLI tooling initialization and debug messaging by @ctrl-schaff in #367
• Cleanup cli import statements by @ctrl-schaff in #375
• changed to have query work when content-type header exists but request body is empty by @jal347 in #378
• Remove cgi dependency by @ctrl-schaff in #379
• Add build and index support to the command-line tooling (biothings-cli) by @ctrl-schaff in #373
• Provide manifest validation and improved error messages upon invalid plugin manifests by @ctrl-schaff in #371
• fixed assistantmanager import issue by @jal347 in #383
• Modify biothings jsonschema namespace by @ctrl-schaff in #370
• Redirect pip show output to /dev/null by @ctrl-schaff in #385
• Update import loader to loaders module by @ctrl-schaff in #386
• Update import module pathing loader by @ctrl-schaff in #387
• Update asyncssh dependency (2.11.0 -> 2.19.0) by @ctrl-schaff in #389
• Plugin directory loading error by @ctrl-schaff in #388
• Suppress logs for elastic transport by @everaldorodrigo in #390
• Add ElasticSearch BulkIndexError Exception to the Indexer Task. by @everaldorodrigo in #380
• Data source registration cleanup by @ctrl-schaff in #361
• Fix mutation in metadata endpoint. by @everaldorodrigo in #392
• Refactor filtering of underscore-prefixed keys from meta dictionary by @everaldorodrigo in #394
• Set Github Action Tests on Pull Request by @everaldorodrigo in #395
• Upgrade ES to 8.17.0 and python to 3.13. Also fix some tests from branch 1.0.x by @everaldorodrigo in #356
• Validator for Biothings Studio Plugin by @jal347 in #382
• Disable Plugin Feature by @DylanWelzel in #396
• Enhance cli index command by @ctrl-schaff in #391
• Cleanup biothings test infrastructure and discovery by @ctrl-schaff in #397
• Ensure plugin_name is passed as a kwarg to all cli operations by @ctrl-schaff in #400
• Revert dataplugin module loading by @ctrl-schaff in #399
• Move hub commits to inner scope by @ctrl-schaff in #403
• Error handling for the IndexerTask mindex function by @ctrl-schaff in #401
• Various bugfixes and cleanup by @ctrl-schaff in #404
• Remove Deprecated doc_type by @everaldorodrigo in #402
• Isolate cli job management by @ctrl-schaff in #405
• Add exception handling for manager future by @ctrl-schaff in #408
• 1.0.x by @everaldorodrigo in #409

Full Changelog: v0.12.5...v1.0.0