BioThings v1.0.0 release
·
191 commits
to master
since this release
What's Changed
- BioThings v0.12.5 by @ctrl-schaff in #349
- Merger storage generalization by @ctrl-schaff in #348
- Add slack config for pytest. by @everaldorodrigo in #350
- Fix Unlisting Logic in Dataload Utils by @DylanWelzel in #352
- Improve index error messaging by @ctrl-schaff in #351
- Hide cloud credentials when finding snapshots by @DylanWelzel in #354
- PostgreSQL Collection by @DylanWelzel in #359
- Snapshot Cleanup by @DylanWelzel in #355
- Bugfix cli table space by @ctrl-schaff in #362
- Correct our command-line web-app find API call by @ctrl-schaff in #366
- jmespath exclude_empty fix by @DylanWelzel in #372
- Apply black formatting to the main repository base by @ctrl-schaff in #374
- Update our CLI tooling initialization and debug messaging by @ctrl-schaff in #367
- Cleanup cli import statements by @ctrl-schaff in #375
- changed to have query work when content-type header exists but request body is empty by @jal347 in #378
- Remove cgi dependency by @ctrl-schaff in #379
- Add build and index support to the command-line tooling (biothings-cli) by @ctrl-schaff in #373
- Provide manifest validation and improved error messages upon invalid plugin manifests by @ctrl-schaff in #371
- fixed assistantmanager import issue by @jal347 in #383
- Modify biothings jsonschema namespace by @ctrl-schaff in #370
- Redirect pip show output to /dev/null by @ctrl-schaff in #385
- Update import loader to loaders module by @ctrl-schaff in #386
- Update import module pathing loader by @ctrl-schaff in #387
- Update asyncssh dependency (2.11.0 -> 2.19.0) by @ctrl-schaff in #389
- Plugin directory loading error by @ctrl-schaff in #388
- Suppress logs for elastic transport by @everaldorodrigo in #390
- Add ElasticSearch BulkIndexError Exception to the Indexer Task. by @everaldorodrigo in #380
- Data source registration cleanup by @ctrl-schaff in #361
- Fix mutation in metadata endpoint. by @everaldorodrigo in #392
- Refactor filtering of underscore-prefixed keys from meta dictionary by @everaldorodrigo in #394
- Set Github Action Tests on Pull Request by @everaldorodrigo in #395
- Upgrade ES to 8.17.0 and python to 3.13. Also fix some tests from branch 1.0.x by @everaldorodrigo in #356
- Validator for Biothings Studio Plugin by @jal347 in #382
- Disable Plugin Feature by @DylanWelzel in #396
- Enhance cli index command by @ctrl-schaff in #391
- Cleanup biothings test infrastructure and discovery by @ctrl-schaff in #397
- Ensure plugin_name is passed as a kwarg to all cli operations by @ctrl-schaff in #400
- Revert dataplugin module loading by @ctrl-schaff in #399
- Move hub commits to inner scope by @ctrl-schaff in #403
- Error handling for the IndexerTask mindex function by @ctrl-schaff in #401
- Various bugfixes and cleanup by @ctrl-schaff in #404
- Remove Deprecated doc_type by @everaldorodrigo in #402
- Isolate cli job management by @ctrl-schaff in #405
- Add exception handling for manager future by @ctrl-schaff in #408
- 1.0.x by @everaldorodrigo in #409
Full Changelog: v0.12.5...v1.0.0