v0.1.4

What's Changed

• Add ProteinGym variant-effect eval tasks (DMS + clinical) by @briney in #11

Full Changelog: v0.1.3...v0.1.4

v0.1.3

What's Changed

• Implement ResFormer value residual connections by @briney in #9
• Paper-exact encoder Canon: implementation, semantic tests, and docs by @briney in #10

Full Changelog: v0.1.2...v0.1.3

v0.1.2

What's Changed

• Add architecture ablation toggles: mask dropout, L2 QKNorm, residual gates, GEGLU, gated attention by @briney in #7
• Implement ResFormer value residual connections by @briney in #8

Full Changelog: v0.1.1...v0.1.2

v0.1.1

What's Changed

• Consolidate run outputs under output_dir; add save_final by @briney in #6

Full Changelog: v0.1.0...v0.1.1

v0.1.0

What's Changed

• HF-compatible OPLM rewrite: model, training/eval/data tooling, and e2e test suite by @briney in #1
• Replace flex_attention with SDPA as the sole attention path by @briney in #2
• Add torch.compile support with DDP crash fix by @briney in #3
• Add selective activation checkpointing mode by @briney in #4
• Lower torch floor to >=2.10 by @briney in #5

New Contributors

• @briney made their first contribution in #1

Full Changelog: v0.0.1...v0.1.0

v0.0.1

Scaffold Python package with src layout and dev tooling

hatchling build, ruff/mypy/pytest configured in pyproject.toml,
CI and PyPI publish workflows, v0.0.1.