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PepQueryMHC v1.0.1

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@progistar progistar released this 17 Apr 19:28
· 66 commits to main since this release
v1.0.1
674f954

Changes

  • While reading the GTF file, transcripts tagged with cds_start_NF and cds_end_NF were previously ignored due to their ambiguous annotations. However, in cases where a gene contains only such transcripts, this led to a "null transcript" exception. To address this, these transcripts are now included in the warning column of the output, allowing users to review and handle them appropriately in annotation mode.
  • If there is no provided location information or no matched reference name, these are annotated as "Unknown" with warning tags in annotation mode
  • Null or irrelevant barcodes are excluded during single-cell RNA-seq processing. Reads associated with these barcodes do not contribute meaningful data and are therefore omitted from downstream analysis.

Full Changelog: v1.0.0...v1.0.1

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