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PepQueryMHC v1.0.4

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@progistar progistar released this 02 Jul 14:48
· 32 commits to main since this release
v1.0.4
b8a8d43

Updates

  • Keep the reference nucleotide sequence field empty when the peptide maps to unmapped reads.
  • Support post-translational modification (PTM) annotations in input peptide sequences.
  • Add an option to specify the sequence column name in target, scan, and fastq modes.
  • Add options to specify the column names for location and strand in annotate mode.
  • Implement automatic BAM indexing if the .bai index file is missing.
  • Remove the .miss.tsv file; instead, unmatched peptides are now listed in each result file with a count of zero.
  • Add a function to automatically detect strandedness for single-end data.
  • Fix various minor bugs.

Full Changelog: v1.0.3...v1.0.4

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