Global Similarity and Distance Computer

This project computes the affine indel gap model global sequence alignment, using the provided sequence strings and score values.

Authors

• @carnol29 / @camaarno

Running Tests

To run a test, run the following command:

Run Locally

Clone the project

  git clone https://github.com/carnol29/global-alignment

Go to the project directory

  cd global-alignment

Run the program

  python3 main.py ["similarity"|"distance"] {blosum_file} {sequences_file}

Usage/Examples

Running a global distance alignment with test files:

python3 main.py distance input_files/blosum62.txt input_files/sequences.txt

Running a global similarity alignment with test files:

python3 main.py similarity input_files/blosum62.txt input_files/sequences.txt