environment issue when reproducing scprint's paper

[jkobject]

When reproducing the scprint paper notebooks you should be using scprint v1.6.4

doing something like that

git clone https://github.com/cantinilab/scprint.git
cd scprint
git checkout tags/1.6.4

However, when you then install it with a package manager like pip that always tries to install the latest version of packages, you will need to setup yourself an additional constraint requirements.txt file to install the right versions because I did not setup a max version for many packages that have then introduced breaking changes.

see jkobject/benGRN#12

Otherwise you might just be able to use uv with uv pip install --resolution lowest -e .