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add a second bactopia version for testing purposes#157

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mehalter merged 3 commits into
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pipeline_dynamodb_entries
Oct 8, 2024
Merged

add a second bactopia version for testing purposes#157
mehalter merged 3 commits into
mainfrom
pipeline_dynamodb_entries

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@mehalter mehalter commented Oct 7, 2024

This generalizes our nextflow pipeline structure in the code to allow specifying multiple versions of Bactopia to run. This also starts paving the way towards #156 by changing the name "bactopia" to "bactopia/bactopia" which is the exact path to call nextflow run on.

Eventually we want the ability (potentially) to specify an arbitrary image/version to call nextflow run on without it needing to be in our DynamoDB table.

Closes #155

@mehalter mehalter marked this pull request as ready for review October 8, 2024 16:38
@mehalter mehalter force-pushed the pipeline_dynamodb_entries branch from 92fdc20 to 6d9c916 Compare October 8, 2024 16:52
@mehalter mehalter merged commit fe219b1 into main Oct 8, 2024
@mehalter mehalter deleted the pipeline_dynamodb_entries branch October 8, 2024 17:06
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Update pipeline registry for short term

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