254 pipeline profile additions#255
Merged
Merged
Conversation
…point for all data analysis pipelines
mehalter
approved these changes
Aug 4, 2025
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
TO TEST
S3 test
Really just check to make sure the
cape-dap-assetsbucket exists and the layout is saneDynamoDB test
Check to make sure the
cape-dap-registry-DataAnalysisPipelineRegistrytable exists and the layout is saneAPI Tests
Test that GET pipelines API endpoint returns new fields
Pipelines have a new
display_namefield (string) and a newprofilesfield (list of profile object keys and display names)curl -k https://api.cape-dev.org/capi-dev/dap/pipelines | jqTest GET profiles for pipeline endpoint with no params
(should get 400 and error message due to missing pipeline and version)
curl -k https://api.cape-dev.org/capi-dev/dap/pipelineprofiles | jqTest GET profiles for pipeline endpoint with only pipeline
(should get 400 and error message due to missing pipeline or version)
curl -k "https://api.cape-dev.org/capi-dev/dap/pipelineprofiles?pipeline=bactopia%2Fbactopia" | jqTest GET profiles for pipeline endpoint with only version
(should get 400 and error message due to missing pipeline or version)
curl -k "https://api.cape-dev.org/capi-dev/dap/pipelineprofiles?version=dev" | jqTest GET profiles for pipeline endpoint with good params
(should get 200 with data)
curl -k "https://api.cape-dev.org/capi-dev/dap/pipelineprofiles?pipeline=bactopia%2Fbactopia&version=v3.0.1" | jq