README.md

I am not sure if there is a better way to put a clarification on the cbw-dev repo, but here is some sort of explanation.

• .github = holds this README.md
• cbw-dev.github.io = has the index.md file for the main website https://cbw-dev.github.io/
• demo-repository = some sort of default repo I think github made when we made the organization

TEMPLATES & DOCUMENTATION

Bookdown

• bookdown-template = bookdown template to be cloned by RC
• bookdown-docs = documentation for RC and TAs to be able to make a workshop using bookdown

Jupyter Book

• jupyterbook-template = jupyter book template to be cloned by RC
• jupyterbook-docs = documentation for RC and TAs to make a workshop using jupyter book

Template / Docs Test Runs

• Nehatest = test run of bookdown template/docs produced by Neha (RC) - Dec 2-3 2024
• mac-loaner-bookdown-test = testing bookdown template/docs - Dec 9 2024

TESTER WEBSITES

BOOKDOWN GITBOOK

Note: GitBook is it's own thing, this is bookdown's version/inspired by GitBook

• INR-2024-Recreate = Recreating INR 2024 workshop, in the Bookdown Gitbook template (90% done, see it's README.md for notes)
• bookdown-test = basic bookdown gitbook w/ test edits (mainly finagling callout blocks)
• fig-bkdn-test = Unedited (I strongly think so) standard bookdown gitbook template (made to test a bug)
• bkd-gitbk-htmlbug = Pretty much unedited standard bookdown gitbook template (made to test a bug)
• bookdown = a copy of the "bookdown-demo", it is a bs4_book (which we probably will not use, mainly because gitbook looks nicer)

CARPENTRIES

• INR_2024_Recreate_Carpentries = A work-in-progress recreation of the INR 2024 workshop, in the Carpentries (w/R) template
• carp-w-o-R-test = A cloned Carpentries w/o R (md files only) template
• sandpaper-docs = This is a cloned Carpentries workshop. The workhop explains how Sandpaper, one of the heavy-lifiting packages in the background of Carpentries templates, work.
• carpentries-varnish-fork = A fork of carpentries varnish repo, which I added the bioinformatics.ca logo to, so that we can change the logo on our other Carpentry workshop template repos

JUPYTER BOOK

• jb-intro-test-book = testing the jupyter book template: result of following the beginner tutorial + testing things found in the docs
• INR-2024-Recreate-JB = A really simple Jupyer Book version of INR 2024, mainly a Proof of Concept

DOCUSAURUS

• docusaurus-sample = deployed docusaurus website intro tutorial
• docusaurus-POC = Docusarus POC (instead of total INR 2024 Recreate) - IN THE WORKS

QUARTO

• quarto-demo = following the intro docs to creating a quarto website - very simple, some bioinformatics.ca customization
• quarto-POC = Quarto POC (instead of total INR 2024 Recreate) - IN THE WORKS