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@cakirb cakirb released this 01 Apr 08:50
· 93 commits to main since this release
v0.6.0
e335192

This update introduces a new workflow and multiple enhancements based on user feedback:

  • Added a new workflow:
    • subset workflow: Enables running the pipeline by subsetting objects using predefined cutoffs instead of the automatic QC workflow (steps 2a-3-4-5a). More details are available in the README.
  • Added support for Cell Ranger outputs in addition to STARsolo.
  • Improvements in nextflow pipeline:
    • Updated the Singularity image for better compatibility.
    • Renamed certain output files for clarity.
    • Optimised the RESUME functionality to improve reliability.
    • Introduced smart memory allocation for the pool_all and add_metadata steps based on input size.
    • Optimised resource allocation for other processes.
    • Enabled the pipeline to work seamlessly with symbolic links in the input.
  • Optimisations in scripts:
    • Removed unused lines, characters, and packages for cleaner code.
    • Fixed hardcoded paths to improve flexibility.
    • Optimised memory usage in the pool_all process.

Full Changelog: v0.5.0...v0.6.0

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