Consolidate all functionality into one library #3
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added 30 commits
March 5, 2025 11:22
…'ve slowed down the tests.
…ombine_stds. To do: rework get_mismatches and its calling code.
…in the ambiguous nucleotide mappings.
Note to self: the test case sequences need more "texture" for the padding/matching to work well.
Also started testing the constructor.
added 27 commits
May 14, 2025 19:33
Still need to try the tests!
…nd did a bunch of plumbing.
The devcontainer is currently not building properly; I think this is because my "postCreateCommand" isn't running sequentially as I thought it was.
…ther than three CSV files.
Tests still need to be fixed!
Tests still need to be updated, as do the default standards YAML.
…ig" files. To do: add new tests to cover all the new code, and convert the existing config CSV files (which are intentionally an old version, and used in bblab) to our YAML format.
Also some untested work on converting EasyHLA's read method for this data.
…cy file format. Also updated the "stock" configuration files.
…ests. Tests seem to be choking when I run the entire test suite; to get them to run I had to move some test files out of place!
…nown" to "unmapped").
…'s reporting of mismatches when there aren't any.
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