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Add a reference id
fix local paths for consensus-genomes
fix sample run paths
Add scratch space and consensus-genome instructions
Updated Home (markdown)
Updated IDseq Pipeline Stage #3: Reporting and Visualization (markdown)
Updated IDseq Pipeline Stage #2: Alignment and Taxonomic Aggregation (markdown)
Updated IDseq Pipeline Stage #1: Host Filtering and QC (markdown)
Updated Running WDL workflows locally (markdown)
Created Running WDL workflows locally (markdown)
Destroyed [Dev] Adding a new dependency to the Docker image (markdown)
Created [Dev] Adding a new dependency to the Docker image (markdown)