Schema 6.0.0

What's Changed

• chore: bump latest schema link to point to schema 5.3.0 by @nayib-jose-gloria in #1333
• approved schema by @brianraymor in #1334
• Created 6.0.0 draft by @brianraymor in #1335
• updates for one organism per dataset by @brianraymor in #1336
• Updated feature_name by @brianraymor in #1337
• Is filtered by @brianraymor in #1338
• Allow multiple values for disease by @brianraymor in #1339
• Updated delimiter for ethnicity by @brianraymor in #1340
• Updated X table by @brianraymor in #1341
• revert is_filtered to 5.3.0 by @brianraymor in #1342
• Updated is_filtered by @brianraymor in #1343
• feat: validate that no two rows in obs are identical by row counts by @joyceyan in #1346
• fix: package setup with validation_internals by @joyceyan in #1350
• feat: update validation of feature_is_filtered by @joyceyan in #1349
• fix: clean up intermediate sort files for ATAC by @Bento007 in #1354
• feat: support multiple terms with disease ontology term id + alter delimiter for multi terms by @joyceyan in #1356
• feat: fix validation of is_primary_data to handle numpy bools by @joyceyan in #1355
• fix: only check duplicate rows of raw matrix, not normalized matrix by @joyceyan in #1358
• feat: support only one organism by @joyceyan in #1357
• feat: remove deduplication of genes by @joyceyan in #1359
• fix: catch indexerror by @joyceyan in #1360
• feat: update migration script for moving organism from obs to uns by @joyceyan in #1361
• chore: Update LICENSE.txt by @Bento007 in #1362
• chore: update copy of disease error msg by @joyceyan in #1363
• fix: organism validation for atac_seq 6.0 by @joyceyan in #1366
• fix: take smaller step when sorting. by @Bento007 in #1353
• updated pinned ontologies by @brianraymor in #1368
• fix: 6.0 one organism implementation by @joyceyan in #1369
• fix: deprecate organism column in addition to organism_ontology_term_id by @joyceyan in #1373
• fix: unique organisms from feature ids by @joyceyan in #1374
• fix: forbid organism from being provided in uns by @joyceyan in #1376
• fix: gene processing script and trigger running it by @joyceyan in #1378
• chore: bump cog for 6.0 by @joyceyan in #1380
• AUTO: update migrate.py schema_version 5.3.2->6.0.0 by @github-actions in #1381
• feat: update migrate script by @joyceyan in #1382
• feat: downgrade feature_is_filtered errors to to warning by @joyceyan in #1383
• chore: bump ontology parser version by @joyceyan in #1385
• chore: fix matrix utils by @joyceyan in #1387
• chore: update logging of ids by @joyceyan in #1390
• chore: remove printing out collections with an open revision in them by @joyceyan in #1386
• updated changelog by @brianraymor in #1392
• migrate.py updates after first 6.0 dev migration by @brian-mott in #1393
• Migrate.py updates after second dev migration for schema 6.0 by @brian-mott in #1394
• editorial by @brianraymor in #1397
• fix: memory optimization in feature_is_filtered validation by @nayib-jose-gloria in #1395

Full Changelog: v5.3.2...v6.0.0