Scan for Polinton-like virus MCP genes, classify them, deposit in a file.
Usage: capscan.sh <amino_acids.faa> prerequisites: seqkit, HH-suite
Capscan will first scan each fasta amino acid gene prediction against 50 condensed MCP profiles (PLV_Viro_Yara_NCLDV_MCPs_V3.1.hmm). Positive hits will then be scanned against MCP clusters (30% identity clusters) to determine the closest virus cluster (clusscan file).