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Cut over slide2vec to packaged hs2p#66

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clemsgrs merged 6 commits intomainfrom
codex/hs2p-package-cutover
Mar 13, 2026
Merged

Cut over slide2vec to packaged hs2p#66
clemsgrs merged 6 commits intomainfrom
codex/hs2p-package-cutover

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@clemsgrs clemsgrs commented Mar 12, 2026

Summary

  • replace the vendored slide2vec/hs2p submodule integration with packaged hs2p public API usage
  • standardize on the HS2P manifest/process-list/artifact schema and key downstream outputs by sample_id
  • reorganize configs into configs/preprocessing/ and configs/models/, remove restrict_to_tissue, and clean up the post-cutover aggregation/process-list edge cases

@clemsgrs clemsgrs merged commit 01a87d8 into main Mar 13, 2026
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@clemsgrs clemsgrs deleted the codex/hs2p-package-cutover branch March 13, 2026 19:45
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