GENEode

This folder is used for the implementation of GENE ODE systems by Shulin Cao.

This repository contains supplemental figures, data and model code (JuPyter notebook) that accompanies research article

Shulin Cao, Kyle S. Buchholz, Philip Tan, Jennifer C. Stowe, Ariel Wang, Annabelle Fowler, Katherine R. Knaus, Ali Khalilimeybodi, Alexander C. Zambon, Jeffrey H. Omens, Jeffrey J. Saucerman, Andrew D. McCulloch (2024) Differential Sensitivity to Longitudinal and Transverse Stretch Mediates Transcriptional Responses in Mouse Neonatal Ventricular Myocytes. Am J Physiol (Heart Circ Physiol)

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1. After downloading this repository, please unzip the files like 'fig*.zip' in the example/simulation_data sub-directory.

2. Refer to the prerequisites.txt for setting up the environment on your local machine.