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30 changes: 15 additions & 15 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -112,28 +112,28 @@ Check other tutorial scripts

### Manual installation
#### Install ETE v4
To install ETE you can follow these steps:
- Download this repository (https://github.com/etetoolkit/ete/releases)
- Build and install ete4 from the repository's root directory with following command:
```
wget https://github.com/etetoolkit/ete/archive/refs/tags/4.1.0-beta.tar.gz
tar -zxvf 4.1.0-beta.tar.gz
cd ete-4.1.0-beta/
python setup.py install
```
or
```
pip install https://github.com/etetoolkit/ete/archive/refs/tags/4.1.0-beta.tar.gz
```
Quick way
```
pip install https://github.com/etetoolkit/ete/archive/ete4.zip
```
For local development
To install ETE in a local directory to help with the development, you can:

- Clone this repository (git clone https://github.com/etetoolkit/ete.git)
- Install dependecies
- If you are using conda: `conda install -c conda-forge cython bottle brotli numpy pyqt`
- Otherwise, you can install them with `pip install <dependencies>`
- Build and install ete4 from the repository's root directory: `pip install -e .`

(In Linux there may be some cases where the gcc library must be installed, which can be done with `conda install -c conda-forge gcc_linux-64`)

#### Install TreeProfiler
Install dependencies
```
# install BioPython, selenium, scipy via conda
conda install -c conda-forge biopython selenium scipy
conda install -c conda-forge biopython selenium scipy matplotlib
# or pip
pip install biopython selenium scipy
pip install biopython selenium scipy matplotlib
```

Install TreeProfiler
Expand Down