v0.11.0

ASPIRE v0.11.0 is minor release, adding several scientific and API changes.

This release provides the following features:

• Extensible ClassAvgSource framework
• Ab-initio modeling for Cn symmetry (CLSymmetryCn)
• FLE Basis (FLEBasis2d)
• IndexedSource for source slicing and remapping
• Immutable source API migration
• Image and Volume API cleanup (return types)
• asnumpy as immutable views
• Additional RELION 3.1 STAR file support
• SNR Estimation and Simulation utilities
• Improved whiten syntax
• Immutable Source API

Documentation and Logging:

• Tutorial Gallery restructuring
• Lecture Feature Demo updates
• Class Averaging API documentation and UML
• Introductory API documentation and UML (gallery)
• Continued filtering of log messages
• CTF forward model validation and tutorial

Bug fixes:

• Redundant Image conversion bug in denoised_src
• Fixed eval_coords clustering (adjusted Rand score)
• Negative Image index slicing (wraparound bug)
• Polar Fourier Row Major cleanup

Systems/CI Updates:

• conda BLAS accelerated numerical backends (mkl, openblas, accelerate)
• Relaxed pip version requirements
• Long running test suite on review-ready
• CI documentation and gallery build on push
• Windows CI patches
• Resolve deprecation warnings (pandas, scipy)
• Partial removal of parameterized_class
• black 23.1.0 updates