feat(init): add --agent mode for post-init integrations#8
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Adds an init reconfiguration path so users can manage agent integrations after a repo is already initialized.
cordon init --agentnow reopens agent selection, reconciles installed/removed integrations, and updates stored managed agents without re-running full init or guardrail prompts.cordon init -ybehavior is explicitly covered with a test to ensure all installable agents are auto-selected, and a second test verifies reinstallation in an initialized repo.Includes updates in
cli/cmd/init.goand new coverage incli/tests/init_agent_test.go.