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Merged
merged 2 commits into from
Dec 18, 2020
Merged

Pr/45 #47

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b4165a5
Issue 44#
RobertoDF Oct 15, 2020
66720c0
Update Display_Probe_Track.m
philshams Dec 18, 2020
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8 changes: 7 additions & 1 deletion SHARP-Track/Display_Probe_Track.m
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Original file line number Diff line number Diff line change
Expand Up @@ -156,7 +156,13 @@
out_of_brain = false;
while ~(ann==1 && out_of_brain) % && distance_stepped > .5*active_probe_length)
m = m-p; % step 10um, backwards up the track
ann = av_plot(round(m(1)),round(m(2)),round(m(3))); %until hitting the top
if strcmp(plane,'coronal')
ann = av_plot(round(m(1)),round(m(2)),round(m(3))); %until hitting the top
elseif strcmp(plane,'sagittal')
ann = av_plot(round(m(3)),round(m(2)),round(m(1))); %until hitting the top
elseif strcmp(plane,'transverse')
ann = av_plot(round(m(2)),round(m(3)),round(m(1))); %until hitting the top
end
if strcmp(st.safe_name(ann), 'root')
% make sure this isn't just a 'root' area within the brain
m_further_up = m - p*20; % is there more brain 200 microns up along the track?
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