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AFT issue: semantic index keep empty, but search index is working... but in here we #43

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AFT issue: semantic index keep empty, but search index is working... but in here we#43
@codelonesomest

Description

@codelonesomest
codelonesomest
opened on May 19, 2026

Description

semantic index keep empty, but search index is working... but in here we have semantic (.local/share/opencode/storage/plugin/aft (index: 864.3 KB, semantic: 173.8 MB, backups: 723.1 KB)

Environment

  • AFT CLI: v0.26.4
  • AFT binary: 0.26.4
  • OS: darwin arm64
  • Node: v22.21.1

Diagnostics

  • Timestamp: 2026-05-19T15:46:04.772Z
  • AFT CLI: v0.26.4
  • AFT binary: 0.26.4
  • OS: darwin arm64
  • Node: v22.21.1

OpenCode

  • Host installed: true
  • Host version: 1.15.5
  • Plugin registered: true
  • AFT config parse error: none

Config paths

{
  "configDir": "~/.config/opencode",
  "harnessConfig": "~/.config/opencode/opencode.jsonc",
  "harnessConfigFormat": "jsonc",
  "aftConfig": "~/.config/opencode/aft.jsonc",
  "aftConfigFormat": "jsonc",
  "tuiConfig": "~/.config/opencode/tui.json",
  "tuiConfigFormat": "json"
}

AFT flags

{
  "enabled": true,
  "hoist_builtin_tools": true,
  "tool_surface": "recommended",
  "search_index": true,
  "semantic_search": true,
  "restrict_to_project_root": false,
  "auto_update": true,
  "max_callgraph_files": 5000,
  "lsp": {
    "auto_install": true,
    "grace_days": 7
  },
  "experimental": {
    "lsp_ty": false,
    "bash": {
      "rewrite": true,
      "compress": true,
      "background": true
    }
  }
}

Plugin cache

{
  "path": "~/.cache/opencode/packages/@cortexkit/aft-opencode@latest",
  "cached": "0.26.4",
  "latest": "0.26.4",
  "exists": true
}

Storage

{
  "path": "~/.local/share/opencode/storage/plugin/aft",
  "exists": true,
  "sizesByKey": {
    "index": 885070,
    "semantic": 182204178,
    "backups": 740425,
    "url_cache": 0,
    "onnxruntime": 0
  }
}

ONNX Runtime

{
  "required": true,
  "systemPath": "/opt/homebrew/lib",
  "systemVersion": null,
  "systemCompatible": null,
  "cachedPath": null,
  "cachedVersion": null,
  "cachedCompatible": null,
  "platform": "darwin-arm64",
  "installHint": "brew install onnxruntime (Apple Silicon)",
  "requirement": ">=1.20"
}

Log file

/var/folders/x2/_jgslr997r7_4_lfgqj8rl_40000gn/T/aft-plugin.log (7 KB)

Binary cache

{
  "versions": [
    "v0.26.4"
  ],
  "activeVersion": "v0.26.4",
  "totalSize": 34205920,
  "path": "~/.cache/aft/bin"
}

LSP cache

{
  "npm": {
    "path": "~/.cache/aft/lsp-packages",
    "entries": [
      {
        "name": "@biomejs/biome",
        "path": "~/.cache/aft/lsp-packages/%40biomejs%2Fbiome",
        "size": 49959589
      },
      {
        "name": "@vue/language-server",
        "path": "~/.cache/aft/lsp-packages/%40vue%2Flanguage-server",
        "size": 46562616
      },
      {
        "name": "pyright",
        "path": "~/.cache/aft/lsp-packages/pyright",
        "size": 19322140
      },
      {
        "name": "yaml-language-server",
        "path": "~/.cache/aft/lsp-packages/yaml-language-server",
        "size": 17909958
      },
      {
        "name": "bash-language-server",
        "path": "~/.cache/aft/lsp-packages/bash-language-server",
        "size": 14501899
      },
      {
        "name": "typescript-language-server",
        "path": "~/.cache/aft/lsp-packages/typescript-language-server",
        "size": 3217832
      },
      {
        "name": "dockerfile-language-server-nodejs",
        "path": "~/.cache/aft/lsp-packages/dockerfile-language-server-nodejs",
        "size": 3216279
      },
      {
        "name": "clangd/clangd",
        "path": "~/.cache/aft/lsp-packages/clangd%2Fclangd",
        "size": 79
      }
    ],
    "totalSize": 154690392
  },
  "github": {
    "path": "~/.cache/aft/lsp-binaries",
    "entries": [
      {
        "name": ".quarantine",
        "path": "~/.cache/aft/lsp-binaries/.quarantine",
        "size": 1424568956
      }
    ],
    "totalSize": 1424568956
  },
  "totalSize": 1579259348
}

Logs (last 200 lines per harness)

OpenCode log (/var/folders/x2/_jgslr997r7_4_lfgqj8rl_40000gn/T/aft-plugin.log)

[2026-05-19T14:59:11.156Z] INFO [aft-plugin] Resolved binary: ~/.cache/aft/bin/v0.26.4/aft
[2026-05-19T14:59:11.160Z] WARN [aft-plugin] Config validation error in ~/.config/opencode/aft.jsonc: : Unrecognized key: "enabled"
[2026-05-19T14:59:11.165Z] INFO [aft-plugin] ONNX Runtime found at system path: /opt/homebrew/lib
[2026-05-19T14:59:11.190Z] INFO [aft-plugin] [lsp] auto-install: 4 npm + 0 github install(s) running in background
[2026-05-19T14:59:11.204Z] INFO [aft-plugin] Workflow hints injected (782 chars)
[2026-05-19T14:59:11.205Z] INFO [aft-plugin] ONNX Runtime ready at /opt/homebrew/lib; new bridges will load semantic backend.
[2026-05-19T14:59:11.845Z] INFO [aft-plugin] RPC server listening on 127.0.0.1:49460
[2026-05-19T14:59:16.568Z] INFO [aft-plugin] [auto-update-checker] Already on latest version for channel: latest
[2026-05-19T15:00:34.785Z] INFO [aft-plugin] [ses_1bfe40b1fffe7nwfzCanaIRAAA] Spawning binary: ~/.cache/aft/bin/v0.26.4/aft (cwd: ~/Desktop/own/posimply-x)
[2026-05-19T15:00:34.798Z] INFO [aft-plugin] [aft] started, pid 2948
[2026-05-19T15:00:34.816Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] gitignore matcher built: 35 pattern(s)
[2026-05-19T15:00:34.830Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] loaded 53 backup entries across 8 session(s) from disk
[2026-05-19T15:00:34.850Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] search index: refreshed 4 stale file(s) from disk cache
[2026-05-19T15:00:34.879Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] loaded symbol cache from disk: 37 files
[2026-05-19T15:00:34.881Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] project root set: ~/Desktop/own/posimply-x
[2026-05-19T15:00:34.890Z] INFO [aft-plugin] Binary version: 0.26.4
[2026-05-19T15:00:34.897Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] watcher started: ~/Desktop/own/posimply-x
[2026-05-19T15:00:34.921Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] persisted symbol cache: 38 files
[2026-05-19T15:00:34.921Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] pre-warmed symbol cache: 1 new, 37 cached, 38 files total
[2026-05-19T15:00:35.530Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] built semantic index: 38 files, 0 entries
[2026-05-19T15:00:35.530Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] skipping semantic index persistence (0 entries)
[2026-05-19T15:00:35.892Z] INFO [aft-plugin] Received status_changed push frame; cached AFT status snapshot
[2026-05-19T15:01:01.578Z] INFO [aft-plugin] [ses_1bfe40b1fffe7nwfzCanaIRAAA] [subagent-detect] cache miss, calling client.session.get(id=ses_1bfe40b1fffe7nwfzCanaIRAAA)
[2026-05-19T15:01:01.589Z] INFO [aft-plugin] [ses_1bfe40b1fffe7nwfzCanaIRAAA] [subagent-detect] SDK returned session=present, parentID=undefined → isSubagent=false
[2026-05-19T15:03:36.951Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] checkpoint created: apply_patch_1779203016950 (2 files)
[2026-05-19T15:08:49.124Z] INFO [aft-plugin] [aft] [ses_1bfe40b1fffe7nwfzCanaIRAAA] checkpoint created: apply_patch_1779203329123 (1 files)
[2026-05-19T15:14:28.977Z] INFO [aft-plugin] [ses_1bf32f547ffegIpd0AzcGhF7RR] [subagent-detect] cache miss, calling client.session.get(id=ses_1bf32f547ffegIpd0AzcGhF7RR)
[2026-05-19T15:14:28.983Z] INFO [aft-plugin] [ses_1bf32f547ffegIpd0AzcGhF7RR] [subagent-detect] SDK returned session=present, parentID=undefined → isSubagent=false
[2026-05-19T15:14:29.222Z] INFO [aft-plugin] [aft] invalidated 2 files
[2026-05-19T15:14:36.072Z] INFO [aft-plugin] Resolved binary: ~/.cache/aft/bin/v0.26.4/aft
[2026-05-19T15:14:36.076Z] WARN [aft-plugin] Config validation error in ~/.config/opencode/aft.jsonc: : Unrecognized key: "enabled"
[2026-05-19T15:14:36.080Z] INFO [aft-plugin] ONNX Runtime found at system path: /opt/homebrew/lib
[2026-05-19T15:14:36.097Z] INFO [aft-plugin] [lsp] auto-install: 4 npm + 0 github install(s) running in background
[2026-05-19T15:14:36.111Z] INFO [aft-plugin] Workflow hints injected (782 chars)
[2026-05-19T15:14:36.112Z] INFO [aft-plugin] ONNX Runtime ready at /opt/homebrew/lib; new bridges will load semantic backend.
[2026-05-19T15:14:36.684Z] INFO [aft-plugin] RPC server listening on 127.0.0.1:49880
[2026-05-19T15:14:41.114Z] INFO [aft-plugin] [auto-update-checker] Skipping check (another instance ran one recently)
[2026-05-19T15:15:03.234Z] INFO [aft-plugin] [ses_1bf321ceeffeW7KDjUgY5l3HtL] Spawning binary: ~/.cache/aft/bin/v0.26.4/aft (cwd: ~/Desktop/own/posimply-x)
[2026-05-19T15:15:03.242Z] INFO [aft-plugin] [aft] started, pid 6729
[2026-05-19T15:15:03.254Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] gitignore matcher built: 35 pattern(s)
[2026-05-19T15:15:03.264Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] loaded 55 backup entries across 8 session(s) from disk
[2026-05-19T15:15:03.286Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] search index: refreshed 1 stale file(s) from disk cache
[2026-05-19T15:15:03.298Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] project root set: ~/Desktop/own/posimply-x
[2026-05-19T15:15:03.302Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] watcher started: ~/Desktop/own/posimply-x
[2026-05-19T15:15:03.306Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] loaded symbol cache from disk: 37 files
[2026-05-19T15:15:03.307Z] INFO [aft-plugin] Binary version: 0.26.4
[2026-05-19T15:15:03.343Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] persisted symbol cache: 38 files
[2026-05-19T15:15:03.343Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] pre-warmed symbol cache: 1 new, 37 cached, 38 files total
[2026-05-19T15:15:03.448Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] built semantic index: 38 files, 0 entries
[2026-05-19T15:15:03.448Z] INFO [aft-plugin] [aft] [ses_1bf321ceeffeW7KDjUgY5l3HtL] skipping semantic index persistence (0 entries)
[2026-05-19T15:15:04.312Z] INFO [aft-plugin] Received status_changed push frame; cached AFT status snapshot
[2026-05-19T15:15:52.719Z] INFO [aft-plugin] [ses_1bf3161e9ffel0AK0O110s7TPk] [subagent-detect] cache miss, calling client.session.get(id=ses_1bf3161e9ffel0AK0O110s7TPk)
[2026-05-19T15:15:52.723Z] INFO [aft-plugin] [ses_1bf3161e9ffel0AK0O110s7TPk] [subagent-detect] SDK returned session=present, parentID="ses_1bf32f547ffegIpd0AzcGhF7RR" → isSubagent=true
[2026-05-19T15:38:56.901Z] INFO [aft-plugin] [aft] [ses_1bf32f547ffegIpd0AzcGhF7RR] checkpoint created: apply_patch_1779205136901 (1 files)
[2026-05-19T15:40:05.293Z] INFO [aft-plugin] [aft] [ses_1bf32f547ffegIpd0AzcGhF7RR] checkpoint created: apply_patch_1779205205293 (1 files)
[2026-05-19T15:44:16.899Z] INFO [aft-plugin] [aft] invalidated 1 files
[2026-05-19T15:44:20.882Z] INFO [aft-plugin] [aft] [ses_1bf32f547ffegIpd0AzcGhF7RR] checkpoint created: apply_patch_1779205460881 (1 files)
[2026-05-19T15:44:46.102Z] INFO [aft-plugin] [aft] invalidated 1 files

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