Release v1.2.0 [2020/02/21]

Features

• BREAKING CHANGE! k-mers are searched on both strands by default. Can be turned off with --no-reverse-complement
• bedgraph output (*.bg) replaces bed output (*.bed) (bed output is still supported with --bed but deprecated and removed from the help string)
• allow user to specify a filename with --output if only a single fasta file has been indexed (previously only the directory could be specified)

Fixes

• truncate fasta identifiers after first space
• allow indexing fasta files with *.fas filename ending
• runtime speedup when BED file is provided for computation on a subset of the input (--selection)
• reduced progress output on terminal when processing multiple fasta files