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[FIX] skip set up graphic window when in command line mode #148

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Merged
merged 1 commit into from
Oct 31, 2020
Merged

[FIX] skip set up graphic window when in command line mode #148

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5 changes: 2 additions & 3 deletions demos/MoAE/MoAEpilot_run.m
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Original file line number Diff line number Diff line change
Expand Up @@ -19,9 +19,8 @@
WD = fileparts(mfilename('fullpath'));

% we add all the subfunctions that are in the sub directories
addpath(fullfile(WD, '..'));
addpath(genpath(fullfile(WD, '..', 'src')));
addpath(genpath(fullfile(WD, '..', 'lib')));
addpath(genpath(fullfile(WD, '..', '..', 'src')));
addpath(genpath(fullfile(WD, '..', '..', 'lib')));

%% Set options
opt = MoAEpilot_getOption();
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14 changes: 7 additions & 7 deletions src/reports/copyGraphWindownOutput.m
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Expand Up @@ -24,15 +24,15 @@
%
% assumes that no file was generated if SPM is running in command line mode

if ~spm('CmdLine')
if nargin < 4 || isempty(imgNb)
imgNb = 1;
end

if nargin < 4 || isempty(imgNb)
imgNb = 1;
end
if nargin < 3 || isempty(action)
action = '';
end

if nargin < 3 || isempty(action)
action = '';
end
if ~spm('CmdLine') && ~isOctave

figureDir = fullfile(opt.derivativesDir, ['sub-' subID], 'figures');
if ~exist(figureDir, 'dir')
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16 changes: 15 additions & 1 deletion src/utils/setGraphicWindow.m
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Original file line number Diff line number Diff line change
@@ -1,5 +1,19 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers

function [interactiveWindow, graphWindow, cmdLine] = setGraphicWindow()
[interactiveWindow, graphWindow, cmdLine] = spm('FnUIsetup');

interactiveWindow = [];
graphWindow = [];
cmdLine = true;

if ~spm('CmdLine') && ~isOctave

try
[interactiveWindow, graphWindow, cmdLine] = spm('FnUIsetup');
catch
warning('Could not open a graphic window. No figure will be created.');
end

end

end