unitcm

unitcm is an R client for the UniTCM Traditional Chinese Medicine multi-omics platform. It provides tidy, paginated access to herbs, compounds, disease-formula associations, TCM ontology, and gene-disease analysis (MIDAS).

Installation

# install.packages("pak")
pak::pkg_install("zx122ty/UniTCM_R_Package")

Quick Start

library(unitcm)

# Search herbs
search_herbs(q = "ginseng")

# Get compound targets (DrugCLIP deep learning predictions)
get_compound_targets("1")

# Gene-disease enrichment
query_disease_enrichment(c("TP53", "BRCA1", "EGFR", "VEGFA"))

Modules

Module	Functions	Description
Herb Explorer	search_herbs(), get_herb()	800+ herbs with properties and compounds
Ingredient Explorer	search_compounds(), get_compound_admet()	50,000+ compounds with ADMET and targets
Disease-Formula Atlas	search_formulas(), get_formula_doses()	259,000+ formula-disease associations
TCM Ontology	search_ontology(), export_ontology()	Hierarchical TCM knowledge system
MIDAS	query_gene_diseases(), query_disease_enrichment()	Multi-source gene-disease analysis

Documentation

• Getting Started
• Database Queries
• Network Pharmacology Workflow
• Gene-Disease Analysis
• Function Reference