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lint: retire ALWAYS_FILES-era claims from contract pages (manifest consolidation PR #60, doc fixes PR #67)
Adopt-Existing-Repo-Design: resolve manifest drift Open Question scripts/lib/template-manifest.sh is now the single source of truth sourced by update-from-template.sh, check-template-version.sh, and adopt.sh; the Open Question in Adopt-Existing-Repo-Design that called this out as deferred is replaced with a resolution note pointing at the manifest, the two new test fixtures (manifest-shape unit, manifest-convergence smoke), and the behaviour delta (+17 files reach future adopters, .gitignore becomes HOST_OWNED). Log entry summarises the change and the verification gate. Refs: feature/template-manifest-consolidation, chunk 6 of 6.
wiki: record --github-wiki design + empirical sweep (PR #59) Adds 'Decision: --github-wiki flag' section to Adopt-Existing-Repo- Design. Six-row behavior matrix, inline non-github host check, dry-run preview semantics, agent-orthogonality reasoning. Empirical sweep across 9 real repos with concrete would-skip / would-apply outcomes. End-to-end Linux + macOS bash 3.2.57 verification recorded. Two new fixtures from PR #59 review-resolution round noted: - adopt-apply-github-wiki-agent-none (agent-orthogonality case) - adopt-dryrun-github-wiki (dry-run preview coverage) Co-authored-by: Priscila Saboia Moreira <pmoreira@nd.edu>
wiki: re-sync Adopt-Existing-Repo-Design with PR #51 review fixes Four sections updated to reflect adopt.sh HEAD 8c3a579 after Chris Sweet's end-to-end review introduced new ADDs (slash commands + skills), the FAILED_ADDS block, the create-from-canonical semantics for absent grants, and the new TOUCH status strings. 1. ADD allowlist: 21 -> 27 entries; new 'CLAUDE-CODE SLASH COMMANDS + SKILLS (6)' sub-block; deferred list pruned; apply-time honesty paragraph for FAILED_ADDS. 2. TOUCH grants: 'absent targets create from canonical' paragraph; per-type apply path described. 3. Dry-run report example: virgin/all-absent verbatim shape, new '[absent; will create from canonical]' marker on TOUCH rows, GRANT WARNINGS now only TOUCH_INVALID, prose updated. 4. Manifest example: 27-file entry, new status strings, TOUCH status vocabulary paragraph, ADD FAILED block placement noted. 5. Empirical table: added chrissweet/FHI360_Lite (Chris's original review host); ADD count 21 -> 27; re-validated 10 prior entries unchanged; Test A and Test B FHI360_Lite e2e results added to the apply-coverage paragraph. All numbers from real terminal runs against HEAD 8c3a579 on 2026-06-27. Co-authored-by: Priscila Saboia Moreira <pmoreira@nd.edu>
Knowledge-Bundles-Framing — paper-brief synthesis (OKF + discipline) Filed for handoff to the agent writing the llm-wiki-paper. Reframes the template as an agentic knowledge-bundle system, using OKF v0.1 terminology as the formalisation anchor and naming the discipline layer (typed edges, verification gate, write protocol, KG, federation) as the contribution on top of the bundle format. Structure: TL;DR; OKF-anchored terminology; agentic stance; five-step bundle lifecycle (create/adopt/maintain/federate/ compose); where we extend OKF; cross-cutting properties; honest limits; naming and positioning for the paper; current implementation status footer separating shipped vs forward as of 2026-06-26. Assumes OKF-Alignment-Ideas recommendations are resolved (frontmatter superset, OKF-canonical reserved filenames, [[wikilinks]] body links, posture (c) companion spec for typed edges). The implementation-status footer makes the forward- state assumption auditable. Pages touched: - Knowledge-Bundles-Framing.md (new, type: synthesis) - index_llm-wiki-memory-template.md (Applied examples entry) - Home_llm-wiki-memory-template.md (Applied examples entry) - 9 See-also back-refs across substrate pages
wiki: reconcile Adopt-Existing-Repo-Design with feature/adopt-sh code (5 drifts) Audit against scripts/adopt.sh and real dry-run output found five drifts in the design page; four corrected here, one corrected in the code (commit 829ba64). 1. ADD allowlist: page listed ~30 paths in six categories; real ADD_ALLOWLIST has 21 entries. Rewrote to list the literal array grouped into four real categories. Added 'Deferred surface' subsection naming the four design-sketch paths that never landed. 2. Sentinel 'lw:wiki-section' for CLAUDE.md: does not exist. Real overlay injects 'lw:memory-boundary' AND 'lw:wiki-maintenance'. Both wiki sections corrected. 3. Dry-run report example: replaced with verbatim shape (six fixed sections, banner line, six-line header, basename-only Resolved). 4. Manifest fields: page claimed 'template version pinned'; it does not. Replaced with verbatim manifest entry and explicit note. 5. --agent=cursor: confirmed correct, no change. Co-authored-by: Priscila Saboia Moreira <pmoreira@nd.edu>
wiki: expand empirical table to 10 verified repos, append lint log Original table listed 6 repos; one (FUNSD) was inherited from the design doc without being run this session. Audit pushed by Priscila revealed the gap. - Cloned crcresearch/FUNSD into scratch and ran dry-run: 0/3 virgin, 21 ADDs (verified, not projected). - Added 3 previously-skipped local repos: CSE-60868 (virgin), llm-wiki-branch-test (3/3 derived-drifted), llm-wiki-memory-template itself (rejected by self-target guard). - Added a paragraph naming the two real-shell --apply runs that back the verified path on both OSes. Co-authored-by: Priscila Saboia Moreira <pmoreira@nd.edu>
wiki: record advisory-abort redesign and bash 3.2 hazard from feature/adopt-sh Two ingest entries from the Tier-1 fixture pass on 2026-06-25 (branch feature/adopt-sh HEAD 57457db): - Adopt-Existing-Repo-Design.md: new 'Decision: advisory abort when host is already adopted' section. Composite detector (Signals A/B/C, 2-of-3 threshold), --force escape hatch, empirical classifications against 6 real repos. - Lesson-Bash32-Empty-Array-Hazard.md: new page. macOS bash 3.2 + set -u + empty array hazard, the asymmetric TOUCH_MISSING fixture that surfaced it, bash -x trace pinpointing scripts/adopt.sh:434, single-site fix in commit 57457db, audit of 5 sibling scripts. Index updated with one-line hooks for both pages. Log entry filed. Co-authored-by: Priscila Saboia Moreira <pmoreira@nd.edu>
OKF-Alignment-Ideas: add vector 4 (adopt.sh + OKF-bundle import) After Priscila flagged that adopt.sh will support adopting OKF memory bundles, the page needed an import-direction section (prior draft covered compatibility and export only). Vector 4 sketches the plausible adopt.sh --seed-from-okf flow, names why it strengthens vectors 2 (reserved filenames) and 3 (link syntax), and explicitly bounds what it does not justify (coupling source-of-truth to OKF wire format, standing reverse export, bypassing the adoption manifest). Three new open follow-ups: link-syntax translation target on import, frontmatter back-fill inference policy, citation reconciliation across OKF's # Citations body section vs our source: frontmatter edge. Pages touched: - OKF-Alignment-Ideas.md (vector 4, conclusion item, three open follow-ups, adopt-sh tag, See-also) - Adopt-Existing-Repo-Design.md (Related-work back-ref)
ingest: record deferred manifest-consolidation follow-up Adopt's ADD_ALLOWLIST and update-from-template's ALWAYS_FILES are parallel arrays for the same conceptual surface; already diverging on the wiki-write-protocol/ tree and agents READMEs. Documents the agreed direction (single source of truth in scripts/lib/template- manifest.sh, two categories) and explicitly defers the work to a follow-up PR after feature/adopt-sh matures.
ingest: add team-ai-Engineering as fourth test-case category A repo instantiated from the template before the shared bash-lib refactor landed surfaces drift in derived projects: ADD for the lib that didn't exist yet, REFUSE for files the template rewired since instantiation. Documents adopt.sh --dry-run as a drift detector complementary to update-from-template.sh.
lint: correct test-case framing on Adopt-Existing-Repo-Design markov_embeddings_and_rag is the prototype where the pattern was originally explored, not a 'manually adopted' repo. The template was extracted from it and the two evolved in parallel from a common idea ancestor. Found while running scripts/adopt.sh stub against it; the REFUSE on wiki/init-wiki.sh wasn't custom-vs-template, it was parallel evolution.
ingest: Adopt-Existing-Repo-Design New synthesis page consolidating issue #6 discussion (Priscila's original body + @hegu-1's two follow-up comments) into a concrete design for scripts/adopt.sh. Key reframe from hegu-1 captured: never-touch is computed, not enumerated. Three lists model — ADD allowlist (template-owned), TOUCH grants (host-owned via .llm-wiki-adopt-grants.yml), NEVER-TOUCH (derived). Test approach proposes a controlled fixture + a real-repo dry-run against crcresearch/FUNSD as a no-wiki public candidate. Index updated under Mechanisms (adjacent to other in-design pages).