Update Python modules

[TimidRobot]

Fixes

• GitHub Advisory Database
  • 🔴 h11 accepts some malformed Chunked-Encoding bodies · CVE-2025-43859
  • 🟠 setuptools has a path traversal vulnerability in PackageIndex.download that leads to Arbitrary File Write · CVE-2025-47273
  • 🟠 Tornado vulnerable to excessive logging caused by malformed multipart form data · CVE-2025-47287
  • 🟠 Tornado has an HTTP cookie parsing DoS vulnerability · CVE-2024-52804
  • 🟡 Jinja2 vulnerable to sandbox breakout through attr filter selecting format method · CVE-2025-27516
  • 🟡 Jinja has a sandbox breakout through malicious filenames · CVE-2024-56201
  • 🟡 Jinja has a sandbox breakout through indirect reference to format method · CVE-2024-56326 ·

Description

Update Python modules

Technical details

--- piplist.old	2025-06-05 12:30:24
+++ piplist.new	2025-06-05 12:30:24
@@ -1,154 +1,151 @@
 Package                   Version
-anyio                     4.6.2.post1
+anyio                     4.9.0
 appnope                   0.1.4
-argon2-cffi               23.1.0
+argon2-cffi               25.1.0
 argon2-cffi-bindings      21.2.0
 arrow                     1.3.0
-asttokens                 2.4.1
-async-lru                 2.0.4
-attrs                     24.2.0
-babel                     2.16.0
-beautifulsoup4            4.12.3
-black                     24.10.0
+asttokens                 3.0.0
+async-lru                 2.0.5
+attrs                     25.3.0
+babel                     2.17.0
+beautifulsoup4            4.13.4
+black                     25.1.0
 bleach                    6.2.0
-cachetools                5.5.0
-certifi                   2024.8.30
+cachetools                5.5.2
+certifi                   2025.4.26
 cffi                      1.17.1
 cfgv                      3.4.0
-charset-normalizer        3.4.0
-click                     8.1.7
+charset-normalizer        3.4.2
+click                     8.2.1
 comm                      0.2.2
-contextlib2               21.6.0
-contourpy                 1.3.1
+contourpy                 1.3.2
 cycler                    0.12.1
-debugpy                   1.8.8
-decorator                 5.1.1
+debugpy                   1.8.14
+decorator                 5.2.1
 defusedxml                0.7.1
 distlib                   0.3.9
-docopt                    0.6.2
-executing                 2.1.0
-fastjsonschema            2.20.0
-filelock                  3.16.1
-flake8                    7.1.1
+executing                 2.2.0
+fastjsonschema            2.21.1
+filelock                  3.18.0
+flake8                    7.2.0
 flickrapi                 2.4.0
-fonttools                 4.55.0
+fonttools                 4.58.1
 fqdn                      1.5.1
-gitdb                     4.0.11
-GitPython                 3.1.43
-google-api-core           2.23.0
-google-api-python-client  2.153.0
-google-auth               2.36.0
+gitdb                     4.0.12
+GitPython                 3.1.44
+google-api-core           2.25.0
+google-api-python-client  2.171.0
+google-auth               2.40.3
 google-auth-httplib2      0.2.0
-googleapis-common-protos  1.66.0
-h11                       0.14.0
-httpcore                  1.0.7
+googleapis-common-protos  1.70.0
+h11                       0.16.0
+httpcore                  1.0.9
 httplib2                  0.22.0
-httpx                     0.27.2
-identify                  2.6.2
+httpx                     0.28.1
+identify                  2.6.12
 idna                      3.10
-internetarchive           5.0.4
+internetarchive           5.4.0
 ipykernel                 6.29.5
-ipython                   8.29.0
+ipython                   9.3.0
+ipython_pygments_lexers   1.1.1
 isoduration               20.11.0
-isort                     5.13.2
+isort                     6.0.1
 jedi                      0.19.2
-Jinja2                    3.1.4
-json5                     0.9.28
+Jinja2                    3.1.6
+json5                     0.12.0
 jsonpatch                 1.33
 jsonpointer               3.0.0
-jsonschema                4.23.0
-jsonschema-specifications 2024.10.1
+jsonschema                4.24.0
+jsonschema-specifications 2025.4.1
 jupyter_client            8.6.3
-jupyter_core              5.7.2
-jupyter-events            0.10.0
+jupyter_core              5.8.1
+jupyter-events            0.12.0
 jupyter-lsp               2.2.5
-jupyter_server            2.14.2
+jupyter_server            2.16.0
 jupyter_server_terminals  0.5.3
-jupyterlab                4.3.1
+jupyterlab                4.4.3
 jupyterlab_pygments       0.3.0
 jupyterlab_server         2.27.3
-kiwisolver                1.4.7
+kiwisolver                1.4.8
 MarkupSafe                3.0.2
-matplotlib                3.9.2
+matplotlib                3.10.3
 matplotlib-inline         0.1.7
 mccabe                    0.7.0
-mistune                   3.0.2
-mypy-extensions           1.0.0
-nbclient                  0.10.0
-nbconvert                 7.16.4
+mistune                   3.1.3
+mypy_extensions           1.1.0
+narwhals                  1.41.0
+nbclient                  0.10.2
+nbconvert                 7.16.6
 nbformat                  5.10.4
 nest-asyncio              1.6.0
 nodeenv                   1.9.1
 notebook_shim             0.2.4
-numpy                     2.1.3
+numpy                     2.2.6
 oauthlib                  3.2.2
 overrides                 7.7.0
-packaging                 24.2
-pandas                    2.2.3
+packaging                 25.0
+pandas                    2.3.0
 pandocfilters             1.5.1
 parso                     0.8.4
 pathspec                  0.12.1
 pexpect                   4.9.0
-pillow                    11.0.0
-pip                       24.0
-platformdirs              4.3.6
-plotly                    5.24.1
-pre_commit                4.0.1
-prometheus_client         0.21.0
-prompt_toolkit            3.0.48
-proto-plus                1.25.0
-protobuf                  5.28.3
-psutil                    6.1.0
+pillow                    11.2.1
+pip                       25.1.1
+platformdirs              4.3.8
+plotly                    6.1.2
+pre_commit                4.2.0
+prometheus_client         0.22.1
+prompt_toolkit            3.0.51
+proto-plus                1.26.1
+protobuf                  6.31.1
+psutil                    7.0.0
 ptyprocess                0.7.0
 pure_eval                 0.2.3
-pyarrow                   18.0.0
+pyarrow                   20.0.0
 pyasn1                    0.6.1
-pyasn1_modules            0.4.1
-pycodestyle               2.12.1
+pyasn1_modules            0.4.2
+pycodestyle               2.13.0
 pycparser                 2.22
-pyflakes                  3.2.0
-Pygments                  2.18.0
-pyparsing                 3.2.0
+pyflakes                  3.3.2
+Pygments                  2.19.1
+pyparsing                 3.2.3
 python-dateutil           2.9.0.post0
-python-dotenv             1.0.1
-python-json-logger        2.0.7
-pytz                      2024.2
+python-dotenv             1.1.0
+python-json-logger        3.3.0
+pytz                      2025.2
 PyYAML                    6.0.2
-pyzmq                     26.2.0
-referencing               0.35.1
+pyzmq                     26.4.0
+referencing               0.36.2
 requests                  2.32.3
 requests-oauthlib         2.0.0
 requests-toolbelt         1.0.0
 rfc3339-validator         0.1.4
 rfc3986-validator         0.1.1
-rpds-py                   0.21.0
-rsa                       4.9
-schema                    0.7.7
+rpds-py                   0.25.1
+rsa                       4.9.1
 seaborn                   0.13.2
 Send2Trash                1.8.3
-setuptools                75.5.0
-six                       1.16.0
-smmap                     5.0.1
+setuptools                80.9.0
+six                       1.17.0
+smmap                     5.0.2
 sniffio                   1.3.1
-soupsieve                 2.6
+soupsieve                 2.7
 stack-data                0.6.3
-tenacity                  9.0.0
 terminado                 0.18.1
 tinycss2                  1.4.0
-tokenize_rt               6.1.0
-tornado                   6.4.1
-tqdm                      4.67.0
+tokenize_rt               6.2.0
+tornado                   6.5.1
+tqdm                      4.67.1
 traitlets                 5.14.3
-types-python-dateutil     2.9.0.20241003
-typing_extensions         4.12.2
-tzdata                    2024.2
+types-python-dateutil     2.9.0.20250516
+typing_extensions         4.14.0
+tzdata                    2025.2
 uri-template              1.3.0
-uritemplate               4.1.1
-urllib3                   2.2.3
-virtualenv                20.27.1
+uritemplate               4.2.0
+urllib3                   2.4.0
+virtualenv                20.31.2
 wcwidth                   0.2.13
 webcolors                 24.11.1
 webencodings              0.5.1
 websocket-client          1.8.0
-wheel                     0.43.0
 wordcloud                 1.9.4

Tests

Ran fetch, process, and report scripts without issue.

Checklist

• My pull request has a descriptive title (not a vague title like Update index.md).
• My pull request targets the default branch of the repository (main or master).
• My commit messages follow best practices.
• My code follows the established code style of the repository.
• I added or updated tests for the changes I made (if applicable).
• I added or updated documentation (if applicable).
• I tried running the project locally and verified that there are no
  visible errors.

Developer Certificate of Origin

For the purposes of this DCO, "license" is equivalent to "license or public domain dedication," and "open source license" is equivalent to "open content license or public domain dedication."

Developer Certificate of Origin

Developer Certificate of Origin
Version 1.1

Copyright (C) 2004, 2006 The Linux Foundation and its contributors.
1 Letterman Drive
Suite D4700
San Francisco, CA, 94129

Everyone is permitted to copy and distribute verbatim copies of this
license document, but changing it is not allowed.


Developer's Certificate of Origin 1.1

By making a contribution to this project, I certify that:

(a) The contribution was created in whole or in part by me and I
    have the right to submit it under the open source license
    indicated in the file; or

(b) The contribution is based upon previous work that, to the best
    of my knowledge, is covered under an appropriate open source
    license and I have the right under that license to submit that
    work with modifications, whether created in whole or in part
    by me, under the same open source license (unless I am
    permitted to submit under a different license), as indicated
    in the file; or

(c) The contribution was provided directly to me by some other
    person who certified (a), (b) or (c) and I have not modified
    it.

(d) I understand and agree that this project and the contribution
    are public and that a record of the contribution (including all
    personal information I submit with it, including my sign-off) is
    maintained indefinitely and may be redistributed consistent with
    this project or the open source license(s) involved.

[Shafiya-Heena]

Thank you!!