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Revisions

  • Document Chopper and NanoFilt as native ONT QC tools. Co-authored-by: Cursor <cursoragent@cursor.com>

    @dsmutin dsmutin committed Aug 30, 2026
    5480427

  • Note QC CLI adapters and sidecar reports for fastp, Cutadapt, Trimmomatic. Co-authored-by: Cursor <cursoragent@cursor.com>

    @dsmutin dsmutin committed Aug 30, 2026
    fba9e36

  • Document Trimmomatic and Cutadapt as native QC tools. Co-authored-by: Cursor <cursoragent@cursor.com>

    @dsmutin dsmutin committed Aug 30, 2026
    d431b14

  • Document native fastp QC for Illumina/BGI and import --pytest. Co-authored-by: Cursor <cursoragent@cursor.com>

    @dsmutin dsmutin committed Aug 30, 2026
    c970ae7

  • Document imported --type QC: trim FASTQ before annotation. Co-authored-by: Cursor <cursoragent@cursor.com>

    @dsmutin dsmutin committed Aug 30, 2026
    8b17e18

  • fix italic

    @dsmutin dsmutin committed Aug 30, 2026
    4a9e5b3

  • Updated Home (markdown)

    @dsmutin dsmutin committed Aug 30, 2026
    98672aa

  • Document databases object schema (lazy-download, flags, version) and tools import --type database. Co-authored-by: Cursor <cursoragent@cursor.com>

    @dsmutin dsmutin committed Aug 29, 2026
    1b24d81

  • update contracts

    @dsmutin dsmutin committed Aug 28, 2026
    b02fb56

  • Created Custom tools import (markdown)

    @dsmutin dsmutin committed Aug 27, 2026
    197c9b7

  • Created Metagenome (re-)generation (markdown)

    @dsmutin dsmutin committed Aug 27, 2026
    e5e4aa7

  • add taxdump index

    @dsmutin dsmutin committed Aug 26, 2026
    e984455

  • update genome config part

    @dsmutin dsmutin committed Aug 26, 2026
    b47ba7d

  • Created Samovar database (markdown)

    @dsmutin dsmutin committed Aug 26, 2026
    6e648e5

  • Main config data

    @dsmutin dsmutin committed Aug 25, 2026
    45ec612

  • brief explanation on install (to update in future)

    @dsmutin dsmutin committed Aug 23, 2026
    132f078

  • Updated How we score (markdown)

    @dsmutin dsmutin committed Aug 22, 2026
    e4c07a4

  • v0, before OPAL insert

    @dsmutin dsmutin committed Aug 22, 2026
    04294d4

  • Update usage

    @dsmutin dsmutin committed Jun 6, 2025
    cf1f67a

  • v.0.5.

    @dsmutin dsmutin committed May 15, 2025
    c212ef5

  • Updated Overampling for ML (markdown)

    @dsmutin dsmutin committed Apr 15, 2025
    65ca45a

  • Created Overampling for ML (markdown)

    @dsmutin dsmutin committed Apr 15, 2025
    38c7d5d

  • Updated Home (markdown)

    @dsmutin dsmutin committed Apr 15, 2025
    cbad058

  • Initial Home page

    @dsmutin dsmutin committed Sep 26, 2024
    b56b5e6

  • Add manual

    @dsmutin dsmutin committed Sep 26, 2024
    874beb4