v1.20.0

New in v1.20.0

• showSoftClip command to show soft clipped bases in read tracks. Soft
  clipped bases have fainted colours. See also setConfig soft_clip_colour.
  These are examples of reads with soft clipped bases on the right:

• Auto-detection of fasta file: No need to explictly use the --fasta/-fa option to
  read the reference fasta file. If --fasta/-fa is unset, ASCIIGenome will
  attempt the find a fasta file in the input file list. So these are all ok:

ASCIIGenome chr7.fa ds051.actb.bam     # >= v1.20.0
ASCIIGenome -fa chr7.fa ds051.actb.bam # < v1.20.0
ASCIIGenome ds051.actb.bam             # No ref at all

• Six frame translation (command translate) shows start and stops codons and ORFs when resolution
  is above single base.

• Support CRAM version 3.1 (better late than never)

• Use native, and latest, htsjdk which means no support for malformed VCF files anymore

• Fix terminal width in Windows (Windows support remains minimal)

• extend command can use percent window size. E.g. extend 0.1 will extend
  the current window by 10% left and right.

• Breaking change: // is no longer the comment string since it interfers with, for example:

print -sys 'sed "s/foo//"'

Now you can only comment out an entire command line using the usual # character as first non-blank characters. E.g:

# print -sys 'sed "s/foo//"'