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fixes #135

@googlebot googlebot added the cla: yes Google is happy with the PR contributors label Nov 4, 2016
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Can you include details on what the problem was and how this solves it in the commit message? Also mention the changes in the e2e_example and how they relate

/// the transitive deps issue.
CopyBuilder.addPhases(phases, graph);

/// Adds all the phases necessary to copy all files into a fake packages dir!
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might want to fix existing cases in this file - these aren't doc comments and shouldn't use triple slash

@jakemac53 jakemac53 merged commit 3335c31 into master Nov 4, 2016
@jakemac53 jakemac53 deleted the removing-package-dep branch November 4, 2016 21:12
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Removing a package seems to cause issues

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