This code accompanies our release of data for software mentions in biomedical literature
Ana-Maria Istrate, Donghui Li, Dario Taraborelli, Michaela Torkar, Boris Veytsman, Ivana Williams.
Chan Zuckerberg Initiative, https://chanzuckerberg.com
Dataset: https://doi.org/10.5061/dryad.6wwpzgn2c
Dataset and code description: https://arxiv.org/abs/2209.00693
- sample_notebooks - sample notebooks for the usage of the dataset
- software-mentions-extractor - the code for extracting mentions from OA PMC
- software-mentions-linker-disambiguator - the code for linking and disambiguation of software mentions
This project adheres to the Contributor Covenant code of conduct. By participating, you are expected to uphold this code. Please report unacceptable behavior to opensource@chanzuckerberg.com.
If you believe you have found a security issue, please responsibly disclose by contacting us at security@chanzuckerberg.com.