Skip to content

Conversation

@hdashnow
Copy link
Member

@hdashnow hdashnow commented Dec 2, 2025

Description

The PubMed queries kept failing and I was struggling to debug them. I switched to using rentrez only instead of easyPubMed and things appear to be working now. I also changed the way the queries are created to make it a bit easier to read. @laurelhiatt did I mess any of the logic up?

Here is the the latest Literature Update using this script (to check the output): #307

Major Changes

  • change get-literature.R to use rentrez only instead of easyPubMed

Minor Changes

  • Reformat queries

Checklist

  • All changes are well summarized
  • Check all tests pass
  • Check that the website preview looks good
  • Update the STRchive version in CITATION.cff, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X.
  • Ask someone to review this PR

@hdashnow hdashnow requested a review from laurelhiatt December 2, 2025 22:01
@netlify
Copy link

netlify bot commented Dec 2, 2025

Deploy Preview for strchive ready!

Name Link
🔨 Latest commit b64753d
🔍 Latest deploy log https://app.netlify.com/projects/strchive/deploys/692f61b1d5806000096e3537
😎 Deploy Preview https://deploy-preview-306--strchive.netlify.app
📱 Preview on mobile
Toggle QR Code...

QR Code

Use your smartphone camera to open QR code link.

To edit notification comments on pull requests, go to your Netlify project configuration.

@hdashnow hdashnow merged commit dac00b7 into main Dec 5, 2025
3 checks passed
@hdashnow hdashnow deleted the fix-pubmed branch December 5, 2025 18:34
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants