change get-literature.R to use rentrez only instead of easyPubMed #306
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Description
The PubMed queries kept failing and I was struggling to debug them. I switched to using rentrez only instead of easyPubMed and things appear to be working now. I also changed the way the queries are created to make it a bit easier to read. @laurelhiatt did I mess any of the logic up?
Here is the the latest Literature Update using this script (to check the output): #307
Major Changes
Minor Changes
Checklist
CITATION.cff, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X.