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HOXD_SD5-critria-update#438

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hdashnow merged 4 commits into
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HOXD13_SD5-critria-update
May 23, 2026
Merged

HOXD_SD5-critria-update#438
hdashnow merged 4 commits into
mainfrom
HOXD13_SD5-critria-update

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@elbayaliyev

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Updated the HOXD13_SD5 criTRia JSON evidence details and root-level description for the HOXD13 polyalanine expansion locus associated with autosomal dominant synpolydactyly type 5. The update replaces null/vague evidence-detail fields with concise curator-style summaries while preserving the original schema, scores, category summaries, total score, classification, publication count, and publication interval.

Fixes: # #437

Major Changes

  • Added a root-level disease/locus description for HOXD13_SD5, summarizing the association between HOXD13 exon 1 polyalanine expansions and synpolydactyly type 5.

  • Updated genetic evidence details for:

    • Probands
    • Allele/expansion-size correlation
    • Segregation
  • Updated the non-human model organism evidence detail using the Hoxd13 +7A synpolydactyly mouse model and transcriptional condensate findings.

Minor Changes

  • Clarified evidence details without changing any assigned scores.
  • Preserved existing category_summary, supercategory_summary, total_score, classification, publication_count, and publication_interval_years.
  • Left several experimental evidence rows citing pmid:22406499 blank/flagged for curator review because the source supports clinical/molecular variant identification but does not appear to provide direct functional assays for biochemical function, protein interaction, regulatory impact, patient cells, or non-patient cells.
  • Curator review needed for HOXD13_SD5 experimental evidence rows #437

Checklist

  • All changes are well summarized
  • Check all tests pass
  • Check that the website preview looks good
  • Update the STRchive version in CITATION.cff, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X.
  • Ask someone to review this PR

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@hdashnow hdashnow force-pushed the HOXD13_SD5-critria-update branch from d3fd1e5 to d2e93bf Compare May 23, 2026 16:40
@hdashnow hdashnow merged commit 8130ccd into main May 23, 2026
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@hdashnow hdashnow deleted the HOXD13_SD5-critria-update branch May 23, 2026 16:50
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2 participants