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Adding conflicting evidence to FRA12A_DIP2B#490

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hdashnow merged 5 commits into
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FRA12A_DIP2B-Criteria-Update
Jun 16, 2026
Merged

Adding conflicting evidence to FRA12A_DIP2B#490
hdashnow merged 5 commits into
mainfrom
FRA12A_DIP2B-Criteria-Update

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@gaberbz

@gaberbz gaberbz commented Jun 2, 2026

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Description

Summarize the changes

Fixes: # Link to any relevant issues and/or discussions

Major Changes

  • Changed FRA12A_DIP2B to disputed and gave conflicting evidence

Minor Changes

Checklist

  • All changes are well summarized
  • Check all tests pass
  • Check that the website preview looks good
  • Update the STRchive version in CITATION.cff, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X.
  • Ask someone to review this PR

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@gaberbz gaberbz marked this pull request as ready for review June 2, 2026 20:17
@gaberbz gaberbz requested a review from hdashnow June 2, 2026 20:17

@hdashnow hdashnow left a comment

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Looks good! I suggest adding a few additional details, see comments.

Comment thread data/criTRia-curations.json Outdated
Comment thread data/criTRia-curations.json Outdated
"Evidence detail": "Repeat expansion associated with promoter hypermethylation, loss of regulatory activity, and predicted allelic silencing. Expanded CGG repeat associated with promoter methylation and reduced DIP2B expression. Unmethylated expansion associated with overexpression.",
"Score": 0.5,
"Citation": "pmid:37248219; pmid:42205056",
"Evidence detail": "Repeat expansion associated with loss of regulatory activity, and predicted allelic silencing. Hypermethylation has been detected in expanded alleles, however another correlation analysis of long-read genomes shows no strong association between DIP2B CGG repeat length and promoter hypermethylation. Expanded CGG repeat associated with reduced DIP2B expression. Unmethylated expansion associated with overexpression.",

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Cite which paper/pmid goes with which comment.

Comment thread data/criTRia-curations.json Outdated
@hdashnow hdashnow merged commit 400e77c into main Jun 16, 2026
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@hdashnow hdashnow deleted the FRA12A_DIP2B-Criteria-Update branch June 16, 2026 02:19
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2 participants