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codycooperross merged 3 commits into from
Sep 26, 2023
Merged

Adds tests for Schema 4.5 and modifies existing tests as needed #131

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3543d56
Adds tests for Schema 4.5 and modifies existing tests as needed
codycooperross Sep 20, 2023
6b896b0
Adds tests for new examples and for relationTypes Collects and IsColl…
codycooperross Sep 21, 2023
1ee32ab
Adds tests for relatedItem.relatedItemType and relatedIdentifier.reso…
codycooperross Sep 25, 2023
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197 changes: 197 additions & 0 deletions source/meta/kernel-4/example/all-fields-v4.4.xml
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<?xml version="1.0" encoding="UTF-8"?>

<!--

This file exercises all elements (but not all attributes or attribute values) for the DataCite Version 4.4 schema.
The content of this file is schematically valid. The data are fabricated to be easily recognizable in test output.
The DataCite Version 4.4 schema set is referenced locally.

Note that while the content is all schematically valid, in many cases no attempt has been made to make it logically valid.
In many cases this illustrates areas when there might be invalid assumptions about formatting and content constraint
on the part of users.
-->

<resource xmlns="http://datacite.org/schema/kernel-4" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://datacite.org/schema/kernel-4 https://schema.datacite.org/meta/kernel-4.4/metadata.xsd">
<identifier identifierType="DOI">10.21399/test-data</identifier>
<creators>
<creator>
<creatorName nameType="Personal">Anne Raugh</creatorName>
<givenName>Anne</givenName>
<familyName>Raugh</familyName>
<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="https://orcid.org">0000-0002-8300-9443</nameIdentifier>
<nameIdentifier nameIdentifierScheme="SomeNameScheme" schemeURI="SomeNameSchemeURI">Annabelle</nameIdentifier>
<affiliation affiliationIdentifier="UMCP" affilicationIdentifierScheme="CampusAbbreviations" schemeURL="http://umd.edu">University of Maryland, College Park</affiliation>
</creator>
</creators>
<titles>
<title>Test Metadata</title>
<title titleType="Subtitle">for Metadata Schema Version 4.4</title>
<title titleType="TranslatedTitle" xml:lang="eo">Testu metadatojn</title>
<title titleType="AlternativeTitle">Fake Data</title>
</titles>
<publisher xml:lang="en">Publisher's Name</publisher>
<publicationYear>2020</publicationYear>
<resourceType resourceTypeGeneral="Dataset">Null Data Set</resourceType>
<subjects>
<subject subjectScheme="SubjectScheme" schemeURI="SubjectSchemeURI" valueURI="SubjectValueURI" xml:lang="en">Test Subject</subject>
<subject>Another Test Subject</subject>
<subject subjectScheme="Unified Astronomy Thesaurus" schemeURI="https://astrothesaurus.org" valueURI="http://astrothesaurus.org/uat/90">Astronomical Reference Materials</subject>
<subject subjectScheme="My Favorite Subjects" classificationCode="Anne-1">Comet Names</subject>
</subjects>
<contributors>
<contributor contributorType="DataCurator">
<contributorName nameType="Personal">Curator, Bob the</contributorName>
<givenName>Bob the</givenName>
<familyName>Curator</familyName>
<nameIdentifier nameIdentifierScheme="dataCuratorNameScheme" schemeURI="dataCuratorNameSchemeURI">Bobby C.</nameIdentifier>
<affiliation affiliationIdentifier="curatorsID" affiliationIdentifierScheme="curatorsIDScheme" schemeURI="curatorsIDSchemeURI">Curators Inc.</affiliation>
</contributor>
<contributor contributorType="HostingInstitution">
<contributorName nameType="Organizational">University Of Maryland, College Park</contributorName>
<givenName>College Park</givenName>
<familyName>University of Maryland</familyName>
<nameIdentifier nameIdentifierScheme="ROR" schemeURI="https://ror.org">047s2c258</nameIdentifier>
</contributor>
<contributor contributorType="HostingInstitution">
<contributorName nameType="Organizational">Astronomy Department</contributorName>
<affiliation affiliationIdentifier="047s2c258" affiliationIdentifierScheme="ROR" schemeURI="https://ror.org">University of Maryland, College Park</affiliation>
</contributor>
</contributors>
<dates>
<date dateType="Available">2020-04-01</date>
<date dateType="Other">2001-10-02</date>
<date dateType="Created">321 BCE</date>
<date dateType="Copyrighted">Yesterday</date>
</dates>
<language>en</language>
<alternateIdentifiers>
<alternateIdentifier alternateIdentifierType="altIDType1">Alternate ID 1</alternateIdentifier>
<alternateIdentifier alternateIdentifierType="altIDType2">Second Alternate ID</alternateIdentifier>
</alternateIdentifiers>
<relatedIdentifiers>
<relatedIdentifier relatedIdentifierType="DOI" relationType="Cites">10.21399/not-real</relatedIdentifier>
<relatedIdentifier relatedIdentifierType="URL" relationType="Continues">http://not.a.real.url</relatedIdentifier>
</relatedIdentifiers>
<relatedItems>
<relatedItem relatedItemType="Book" relationType="IsPublishedIn">
<relatedItemIdentifier relatedItemIdentifierType="Handle">Big Blue Book on the Left</relatedItemIdentifier>
<creators>
<creator>
<creatorName nameType="Personal">Raugh, Anne</creatorName>
<givenName>Anne</givenName>
<familyName>Raugh</familyName>
</creator>
<creator>
<creatorName nameType="Organizational">Anne Raugh Foundation for Artisanal Programmers</creatorName>
</creator>
</creators>
<titles>
<title>Fake Data for All Occasions</title>
<title titleType="TranslatedTitle" xml:lang="eo">Falsaj Datumoj por Ĉiuj Okazoj</title>
</titles>
<publicationYear>1865</publicationYear>
<volume>3</volume>
<issue>January</issue>
<number numberType="Chapter">II.4</number>
<firstPage>CDIV</firstPage>
<lastPage>501</lastPage>
<publisher>Pointless Books, LLC</publisher>
<edition>First</edition>
<contributors>
<contributor contributorType="Editor">
<contributorName>Hubbard, Old Mother</contributorName>
<givenName>Old</givenName>
<familyName>Hubbard</familyName>
</contributor>
</contributors>
</relatedItem>
</relatedItems>
<sizes>
<size>Big Honkin'</size>
<size>10 PB</size>
<size>1,000,006 files</size>
</sizes>
<formats>
<format>text/plain</format>
<format>Warm with melted cheese</format>
</formats>
<version>-1.0</version>
<rightsList>
<rights>Copyright © 2020 Anne Raugh, All Rights Reserved</rights>
<rights>All rights for this work are administered by My Evil Twin</rights>
<rights rightsURI="urn:rights:identifier" rightsIdentifier="rightsID" rightsIdentifierScheme="rightsIDScheme" schemeURI="rights:IDScheme:URI" xml:lang="eo">License granted for private use</rights>
</rightsList>
<descriptions>
<description descriptionType="Abstract">
This is test metadata. There are no data. Stop looking for data, because there aren't any.
<br />
Seriously, stop looking.
</description>
<description descriptionType="Abstract" xml:lang="eo">
Ĉi tio estas testaj metadatenoj. Ne estas datumoj. Ĉesu serĉi datumojn, ĉar ne ekzistas.
<br />
Grave, ĉesu rigardi.
</description>
<description descriptionType="SeriesInformation">
This fake metadata exercises all the elements comprising the DataCite Metadata Schema for the
version indicated. The content is schematically valid, though logically ridiculous. This
particular description, however, does not fit the assumptions of the intake processing.
</description>
<description descriptionType="SeriesInformation"></description>
<description descriptionType="Other">
The two abstract fields are equivalent, but in different languages.
</description>
</descriptions>
<geoLocations>
<geoLocation>
<geoLocationBox>
<westBoundLongitude>-78.00</westBoundLongitude>
<eastBoundLongitude>-76.5</eastBoundLongitude>
<southBoundLatitude>38.25</southBoundLatitude>
<northBoundLatitude>78.5</northBoundLatitude>
</geoLocationBox>
<geoLocationPlace>Frederick, MD</geoLocationPlace>
<geoLocationPoint>
<pointLongitude>39.412327</pointLongitude>
<pointLatitude>-77.425461</pointLatitude>
</geoLocationPoint>
<geoLocationPolygon>
<polygonPoint>
<pointLongitude>-74.0</pointLongitude>
<pointLatitude>38.0</pointLatitude>
</polygonPoint>
<polygonPoint>
<pointLongitude>-77.0</pointLongitude>
<pointLatitude>40.0</pointLatitude>
</polygonPoint>
<polygonPoint>
<pointLongitude>-80.0</pointLongitude>
<pointLatitude>39.0</pointLatitude>
</polygonPoint>
<polygonPoint>
<pointLongitude>-78.0</pointLongitude>
<pointLatitude>36.0</pointLatitude>
</polygonPoint>
<polygonPoint>
<pointLongitude>-75.0</pointLongitude>
<pointLatitude>37.0</pointLatitude>
</polygonPoint>
</geoLocationPolygon>
</geoLocation>
<geoLocation>
<geoLocationPlace>Not Frederick, MD</geoLocationPlace>
</geoLocation>
</geoLocations>
<fundingReferences>
<fundingReference>
<funderName>My Pocket</funderName>
<funderIdentifier funderIdentifierType="Other">Money Source</funderIdentifier>
<awardNumber awardURI="some URI">00001</awardNumber>
<awardTitle>Money for Testing</awardTitle>
</fundingReference>
<fundingReference>
<funderName>NASA</funderName>
<funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/100000104</funderIdentifier>
</fundingReference>
</fundingReferences>
</resource>
47 changes: 47 additions & 0 deletions source/meta/kernel-4/example/datacite-example-Box_dateCollected_DataCollector-v4.xml
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<?xml version="1.0" encoding="UTF-8"?>
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 https://schema.datacite.org/meta/kernel-4/metadata.xsd">
<identifier identifierType="DOI">10.5072/DataCollector_dateCollected_geoLocationBox</identifier>
<creators>
<creator>
<creatorName nameType="Personal">Peach, A.</creatorName>
</creator>
</creators>
<titles>
<title xml:lang="en">Temperature and Humidity in School Classrooms, Ponhook Lake, N.S., 1961-1962</title>
</titles>
<publisher xml:lang="en">National Research Council Canada</publisher>
<publicationYear>1963</publicationYear>
<subjects>
<subject xml:lang="en" schemeURI="https://lccn.loc.gov/sh85062931" subjectScheme="LCCN">Temperature</subject>
<subject xml:lang="en" schemeURI="https://lccn.loc.gov/sh85133712" subjectScheme="LCCN">Humidity</subject>
<subject xml:lang="en" schemeURI="https://lccn.loc.gov/sh88003345" subjectScheme="LCCN">Classrooms</subject>
<subject xml:lang="en">Ponhook Lake (N.S.)</subject>
</subjects>
<contributors>
<contributor contributorType="DataCollector">
<contributorName nameType="Personal">Pomegranate, B.</contributorName>
</contributor>
</contributors>
<dates>
<date dateType="Collected">1961-06-01/1962-10-12</date>
</dates>
<language>en</language>
<resourceType resourceTypeGeneral="Text">report</resourceType>
<sizes>
<size>10 p.</size>
</sizes>
<descriptions>
<description xml:lang="en" descriptionType="Abstract">The Division has been taking records of temperatures and humidities in groups of houses at various locations in Canada over the past several years. This survey has more recently been extended to include schools. Records obtained from classrooms in six schools in Ponhook Lake, Nova Scotia from June 1, 1961-October 12, 1962 are now reported.</description>
</descriptions>
<geoLocations>
<geoLocation>
<geoLocationPlace>Ponhook Lake, Nova Scotia</geoLocationPlace>
<geoLocationBox>
<westBoundLongitude>-64.2</westBoundLongitude>
<eastBoundLongitude>-63.8</eastBoundLongitude>
<southBoundLatitude>44.7167</southBoundLatitude>
<northBoundLatitude>44.9667</northBoundLatitude>
</geoLocationBox>
</geoLocation>
</geoLocations>
</resource>
54 changes: 54 additions & 0 deletions source/meta/kernel-4/example/datacite-example-GeoLocation-v4.xml
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<?xml version="1.0" encoding="UTF-8"?>
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 https://schema.datacite.org/meta/kernel-4/metadata.xsd">
<identifier identifierType="DOI">10.5072/geoPointExample</identifier>
<creators>
<creator>
<creatorName nameType="Personal">Schumann, Kai</creatorName>
</creator>
<creator>
<creatorName nameType="Personal">Völker, David</creatorName>
</creator>
<creator>
<creatorName nameType="Personal">Weinrebe, Wilhelm Reiber</creatorName>
</creator>
</creators>
<titles>
<title xml:lang="en">Gridded results of swath bathymetric mapping of Disko Bay, Western Greenland, 2007-2008</title>
</titles>
<publisher xml:lang="en">PANGAEA - Data Publisher for Earth &amp; Environmental Science</publisher>
<publicationYear>2011</publicationYear>
<subjects>
<subject xml:lang="en" subjectScheme="DDC" classificationCode="551">Geology, hydrology, meteorology</subject>
</subjects>
<contributors>
<contributor contributorType="HostingInstitution">
<contributorName nameType="Organizational">IFM-GEOMAR Leibniz-Institute of Marine Sciences, Kiel University</contributorName>
</contributor>
</contributors>
<language>en</language>
<resourceType resourceTypeGeneral="Dataset" />
<relatedIdentifiers>
<relatedIdentifier relatedIdentifierType="DOI" relationType="Continues">10.5072/timeSeries</relatedIdentifier>
</relatedIdentifiers>
<sizes>
<size>4 datasets</size>
</sizes>
<formats>
<format>application/zip</format>
</formats>
<rightsList>
<rights xml:lang="en-US" schemeURI="https://spdx.org/licenses/" rightsIdentifierScheme="SPDX" rightsIdentifier="CC-BY-3.0" rightsURI="https://creativecommons.org/licenses/by/3.0" />
</rightsList>
<descriptions>
<description xml:lang="en" descriptionType="Abstract">A ship-based acoustic mapping campaign was conducted at the exit of Ilulissat Ice Fjord and in the sedimentary basin of Disko Bay to the west of the fjord mouth. Submarine landscape and sediment distribution patterns are interpreted in terms of glaciomarine facies types that are related to variations in the past position of the glacier front. In particular, asymmetric ridges that form a curved entity and a large sill at the fjord mouth may represent moraines hat depict at least two relatively stable positions of the ice front in the Disko Bay and at the fjord mouth. In this respect, Ilulissat Glacier shows prominent differences to the East Greenland Kangerlussuaq Glacier which is comparable in present size and present role for the ice discharge from the inland ice sheet. Two linear clusters of pockmarks in the center of the sedimentary basin seem to be linked to ongoing methane release due to dissociation of gas hydrates, a process fueled by climate warming in the Arctic realm.</description>
</descriptions>
<geoLocations>
<geoLocation>
<geoLocationPlace>Disko Bay</geoLocationPlace>
<geoLocationPoint>
<pointLongitude>-52.000000</pointLongitude>
<pointLatitude>69.000000</pointLatitude>
</geoLocationPoint>
</geoLocation>
</geoLocations>
</resource>
61 changes: 61 additions & 0 deletions source/meta/kernel-4/example/datacite-example-HasMetadata-v4.xml
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<?xml version="1.0" encoding="UTF-8"?>
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 https://schema.datacite.org/meta/kernel-4/metadata.xsd">
<identifier identifierType="DOI">10.5072/example</identifier>
<creators>
<creator>
<creatorName nameType="Personal">Mari, Bernard</creatorName>
<givenName>Bernard</givenName>
<familyName>Mari</familyName>
</creator>
<creator>
<creatorName nameType="Personal">Puissegur, Marie-Pierre</creatorName>
<givenName>Marie-Pierre</givenName>
<familyName>Puissegur</familyName>
</creator>
<creator>
<creatorName nameType="Personal">Barbry, Pascal</creatorName>
<givenName>Pascal</givenName>
<familyName>Barbry</familyName>
</creator>
<creator>
<creatorName nameType="Personal">Lebrigand, Kevin</creatorName>
<givenName>Kevin</givenName>
<familyName>Lebrigand</familyName>
</creator>
</creators>
<titles>
<title xml:lang="en">Identification of putative novel specific targets of mir-210 in A549 human adenocarcinoma cells</title>
</titles>
<publisher xml:lang="fr">Institut de Pharmacologie Moleculaire et Cellulaire (IPMC), CNRS UMR6097, Universite de Nice Sophia-Antipolis, 660 route des lucioles, 06560 Valbonne - Sophia-Antipolis, France</publisher>
<publicationYear>2010</publicationYear>
<subjects>
<subject schemeURI="http://www.nlm.nih.gov/mesh/meshhome.html" subjectScheme="Mesh">Neoplasms</subject>
<subject schemeURI="http://purl.obolibrary.org/obo/obi" subjectScheme="OBI">Transcription profiling</subject>
<subject schemeURI="http://www.ncbi.nlm.nih.gov/Taxonomy/" subjectScheme="NCBITaxon">Homo sapiens</subject>
<subject schemeURI="http://www.ebi.ac.uk/efo" subjectScheme="Mesh">A549</subject>
<subject schemeURI="http://purl.obolibrary.org/obo/obi" subjectScheme="OBI">DNA microarray</subject>
</subjects>
<contributors>
<contributor contributorType="HostingInstitution">
<contributorName xml:lang="fr" nameType="Organizational">INIST-CNRS</contributorName>
</contributor>
</contributors>
<language>en</language>
<resourceType resourceTypeGeneral="Report">Experiment report</resourceType>
<relatedIdentifiers>
<relatedIdentifier relatedIdentifierType="URL" relatedMetadataScheme="ISA-Tab" relationType="HasMetadata" schemeType="Text" schemeURI="http://isatab.sourceforge.net/docs/ISA-TAB_release-candidate-1_v1.0_24nov08.pdf">http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE18695</relatedIdentifier>
</relatedIdentifiers>
<sizes>
<size>183 ko</size>
<size>3 pages</size>
</sizes>
<formats>
<format>PDF</format>
</formats>
<rightsList>
<rights xml:lang="en-US" schemeURI="https://spdx.org/licenses/" rightsIdentifierScheme="SPDX" rightsIdentifier="CC-BY-NC-ND-3.0" rightsURI="http://creativecommons.org/licenses/by-nc-nd/3.0/" />
</rightsList>
<descriptions>
<description xml:lang="en" descriptionType="Abstract">To identify putative novel specific targets of mir-210, we overexpressed miR-210 as well as miR-34a and a siRNA targeted against E2F3 in A549 human adenocarcinoma cells by transfecting them with synthetic pre-miRNAs or a synthetic negative pre-miRNA as control (miR-Neg). RNA samples were harvested at 48 hours post-transfection and 2 independent experiments performed in dye-swap: miR-210 versus miR-Neg ; miR-34a versus miR-Neg ; si-E2F3 versus miR-Neg ; si-control versus miR-Neg.</description>
</descriptions>
</resource>
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