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1. exercises exercises Public

   data for bioinformatics exercises

2. keggModule_finder keggModule_finder Public

   Simple script to parse KEGG orthologues annotations and KEGG database to identify KEGG modules present in microbial genomes.

   Python

3. CommunityReadSimulator CommunityReadSimulator Public

   Simple script to generate shotgun metagenomic sequencing reads from a set of genomes representing a microbial community.

   Python

4. FastaToKmerFreq FastaToKmerFreq Public

   Simple script to reduce DNA sequences (in Fasta format) to K-mer frequencies.

   Python

5. SomeNeuralNet SomeNeuralNet Public

   Numpy implementations of key concepts and algorithms in deep learning.

   Python