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High-Throughput Integrated Flow Cytometry Analysis of Human Fatal Asthma

Scripts and source code are compatible with Python 3.14.

CD3-scripts

  • Tissue-wide scripts for analysis of integrated datasets from flow cytometry panels for T cell populations.
  • Script for stratification of datasets based on the age of donors.

Myeloid-scripts

  • Tissue-wide scripts for analysis of integrated datasets from flow cytometry panels for Myeloid populations.

src

  • Python modules for importing FCS data into the environment and preparing it as an AnnData object.
  • Visualization of PCA components
📦 
├─ CD3-scripts
│  ├─ age_strata.ipynb
│  ├─ cytokine_assay.ipynb
│  ├─ script.ipynb
│  └─ total_flow.ipynb
├─ Myeloid-scripts
│  └─ myeloid_script.ipynb
├─ README.md
└─ src
   ├─ plotting_methods.py
   └─ preprocessing.py

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Pipeline for clustering and visualization of tissue-specific flow cytometry data from asthmatic organ donors

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