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[anaconda]-Update vulnerable packages and versions in security patch script and test files #1805

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Merged
abdurriq merged 8 commits into from
Mar 25, 2026
Merged

[anaconda]-Update vulnerable packages and versions in security patch script and test files #1805

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3dff329
Update vulnerable packages and versions in security patch script and …
sireeshajonnalagadda Mar 17, 2026
ed5dc27
Remove analysis file for Anaconda critical and high vulnerabilities
sireeshajonnalagadda Mar 17, 2026
4300972
Merge branch 'main' into anaconda_sec_vulns
sireeshajonnalagadda Mar 18, 2026
e5c1860
Potential fix for pull request finding
sireeshajonnalagadda Mar 18, 2026
c75e384
Merge branch 'main' into anaconda_sec_vulns
sireeshajonnalagadda Mar 25, 2026
ffd8215
Update mistune package version to 3.0.1
sireeshajonnalagadda Mar 25, 2026
9b6cbce
Update script to use patched package versions
sireeshajonnalagadda Mar 25, 2026
c7be7c8
Merge branch 'main' into anaconda_sec_vulns
abdurriq Mar 25, 2026
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14 changes: 7 additions & 7 deletions src/anaconda/.devcontainer/apply_security_patches.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -3,11 +3,11 @@
# vulnerabilities:
# werkzeug - [GHSA-f9vj-2wh5-fj8j]
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vulnerable_packages=( "mistune=3.0.1" "aiohttp=3.10.11" "cryptography=44.0.1" "h11=0.16.0" "jinja2=3.1.6" "jupyter_core=5.8.1" "protobuf=5.29.5" "requests=2.32.4" "setuptools=78.1.1" "transformers=4.53.0" "urllib3=2.5.0" "werkzeug=3.1.5" "jupyter-lsp=2.2.2" "scrapy=2.11.2" \
"zipp=3.19.1" "tornado=6.4.2" "jupyterlab=4.4.8" "imagecodecs=2024.9.22" "fonttools=4.60.2" "pyarrow=17.0.0" "brotli=1.2.0" "filelock=3.20.1" "bokeh=3.8.2" "distributed=2026.1.0" "wheel=0.46.2" )
patched_package_versions=( "mistune=3.0.1" "aiohttp=3.10.11" "cryptography=44.0.1" "h11=0.16.0" "jinja2=3.1.6" "jupyter_core=5.8.1" "protobuf=6.33.5" "requests=2.32.4" "setuptools=78.1.1" "transformers=4.53.0" "urllib3=2.5.0" "werkzeug=3.1.5" "jupyter-lsp=2.2.2" "scrapy=2.14.2"
"zipp=3.19.1" "tornado=6.5.5" "jupyterlab=4.4.8" "imagecodecs=2024.9.22" "fonttools=4.60.2" "pyarrow=17.0.0" "brotli=1.2.0" "filelock=3.20.1" "bokeh=3.8.2" "distributed=2026.1.0" "wheel=0.46.2" "nltk=3.9.3" "black=26.3.1" "pyjwt=2.12.0" "pillow=12.1.1" "pyopenssl=26.0.0" "nbconvert=7.17.0" )

# Define the number of rows (based on the length of vulnerable_packages)
rows=${#vulnerable_packages[@]}
# Define the number of rows (based on the length of patched_package_versions)
rows=${#patched_package_versions[@]}

# Define the number of columns
cols=2
Expand All @@ -18,8 +18,8 @@ declare -A required_versions

# Fill the 2D array
for ((i=0; i<rows; i++)); do
# Split each element of vulnerable_packages by the '=' sign
IFS='=' read -ra parts <<< "${vulnerable_packages[$i]}"
# Split each element of patched_package_versions by the '=' sign
IFS='=' read -ra parts <<< "${patched_package_versions[$i]}"
# Assign the parts to the 2D array
packages_array["$i,0"]="${parts[0]}"
packages_array["$i,1"]="${parts[1]}"
Expand All @@ -28,7 +28,7 @@ done

# Add an array for packages that should always pin to the provided version,
# even if higher version is available in conda channel
pin_to_required_version=("transformers" "imagecodecs" "brotli" "protobuf" "distributed")
pin_to_required_version=("transformers" "imagecodecs" "brotli" "distributed")

# Function to check if a package is in the pin_to_required_version array
function is_pin_to_required_version() {
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19 changes: 10 additions & 9 deletions src/anaconda/test-project/test.sh
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Expand Up @@ -31,31 +31,31 @@ check "usr-local-etc-config-does-not-exist" test ! -f "/usr/local/etc/gitconfig"

checkPythonPackageVersion "joblib" "1.2.0"
checkPythonPackageVersion "cookiecutter" "2.1.1"
checkPythonPackageVersion "mistune" "2.0.3"
checkPythonPackageVersion "mistune" "3.0.1"
checkPythonPackageVersion "numpy" "1.22"
checkPythonPackageVersion "setuptools" "78.1.1"
checkPythonPackageVersion "wheel" "0.46.2"
checkPythonPackageVersion "nbconvert" "6.5.1"
checkPythonPackageVersion "nbconvert" "7.17.0"
checkPythonPackageVersion "werkzeug" "3.1.5"
checkPythonPackageVersion "certifi" "2022.12.07"
checkPythonPackageVersion "cryptography" "44.0.1"
checkPythonPackageVersion "h11" "0.16.0"
checkPythonPackageVersion "jupyter_core" "5.8.1"
checkPythonPackageVersion "protobuf" "5.29.5"
checkPythonPackageVersion "protobuf" "6.33.5"
checkPythonPackageVersion "transformers" "4.53.0"
checkPythonPackageVersion "mpmath" "1.3.0"
checkPythonPackageVersion "aiohttp" "3.10.2"
checkPythonPackageVersion "tornado" "6.4.2"
checkPythonPackageVersion "tornado" "6.5.5"
checkPythonPackageVersion "jupyter_server" "2.14.1"
checkPythonPackageVersion "pyarrow" "17.0.0"
checkPythonPackageVersion "pillow" "10.3.0"
checkPythonPackageVersion "pillow" "12.1.1"
checkPythonPackageVersion "jupyterlab" "4.4.8"
checkPythonPackageVersion "notebook" "7.2.2"
checkPythonPackageVersion "gitpython" "3.1.41"
checkPythonPackageVersion "jupyter-lsp" "2.2.2"
checkPythonPackageVersion "idna" "3.7"
checkPythonPackageVersion "jinja2" "3.1.4"
checkPythonPackageVersion "scrapy" "2.11.2"
checkPythonPackageVersion "scrapy" "2.14.2"
checkPythonPackageVersion "requests" "2.32.4"
checkPythonPackageVersion "scikit-learn" "1.5.0"
checkPythonPackageVersion "zipp" "3.19.1"
Expand All @@ -65,18 +65,19 @@ checkPythonPackageVersion "fonttools" "4.60.2"
checkPythonPackageVersion "distributed" "2026.1.0"
checkPythonPackageVersion "filelock" "3.20.1"
checkPythonPackageVersion "bokeh" "3.8.2"
checkPythonPackageVersion "pyjwt" "2.12.0"

checkCondaPackageVersion "pyopenssl" "24.2.1"
checkCondaPackageVersion "pyopenssl" "26.0.0"
checkCondaPackageVersion "requests" "2.32.4"
checkCondaPackageVersion "pygments" "2.15.1"
checkCondaPackageVersion "mpmath" "1.3.0"
checkCondaPackageVersion "urllib3" "2.5.0"
checkCondaPackageVersion "pyarrow" "17.0.0"
checkCondaPackageVersion "pydantic" "2.5.3"
checkCondaPackageVersion "tqdm" "4.66.4"
checkCondaPackageVersion "black" "24.4.2"
checkCondaPackageVersion "black" "26.3.1"
checkCondaPackageVersion "streamlit" "1.37.0"
checkCondaPackageVersion "nltk" "3.9"
checkCondaPackageVersion "nltk" "3.9.3"

check "conda-update-conda" bash -c "conda update -y conda"
check "conda-install-tensorflow" bash -c "conda create --name test-env -c conda-forge --yes tensorflow"
Expand Down
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