Updated 1 Setup Cluster (markdown)
Updated Input Data Preparation (markdown)
Updated System Requirements (markdown)
Updated Quick Start (markdown)
Updated Parameters (markdown)
Updated 4 Registration (markdown)
Updated 2 Color Correction (markdown)
Updated Home (markdown)
Updated Example Batching (markdown)
Updated Performance Profile (markdown)
Updated 6 Base Calling (markdown)
Updated 5 Puncta Extraction (markdown)
Updated _Sidebar (markdown)
Moved previous content (with updated examples) to quick start.