Revert "Added Dockerfile and accessing mdx2 through Docker container"

[jlee733]

-This PR is being reverted to keep this repo in sync with the Ando Lab's mdx2 repo
-The files being deleted will be moved to the 'mdx2-workflows' repo
Reverts #57

Summary by CodeRabbit

• Chores

  • Removed Docker containerization infrastructure including Dockerfile configuration, Docker Hub build automation workflows, and container-specific ignore rules.

• Documentation

  • Installation instructions have been updated to focus exclusively on conda/micromamba-based environment setup. Docker container-based installation is no longer available or documented.

[coderabbitai]

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info

⚙️ Run configuration

Configuration used: Repository UI

Review profile: CHILL

Plan: Pro

Run ID: 838294e5-bb00-4ed3-9bb2-b4d309d8dc70

📥 Commits

Reviewing files that changed from the base of the PR and between 9570c85 and 091367b.

📒 Files selected for processing (4)

• .dockerignore
• .github/Dockerfile
• .github/workflows/docker.yml
• README.md

💤 Files with no reviewable changes (3)

• .dockerignore
• .github/Dockerfile
• .github/workflows/docker.yml

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Walkthrough

Removal of Docker-related infrastructure and configuration: eliminates .dockerignore, .github/Dockerfile, .github/workflows/docker.yml, and Docker setup documentation from README.md. This disables Docker image building and distribution workflows from the repository.

Changes

Cohort / File(s)	Summary
Docker Infrastructure .dockerignore, .github/Dockerfile, .github/workflows/docker.yml	Removes Docker build context configuration, multi-stage Dockerfile with JupyterLab setup, and GitHub Actions workflow that built and pushed Docker images to Docker Hub.
Documentation README.md	Removes Docker-based developer installation section and Docker Hub image pull instructions from prerequisites; retains conda-based setup guidance.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~5 minutes

Possibly related PRs

• PR #57: Reverses prior Docker-related additions by deleting the same Dockerfile, workflow, and README Docker content.
• PR #58: Also removes Docker artifacts (Dockerfile(s), GitHub Actions docker workflow, and Docker usage documentation).
• PR #38: Modifies Docker/CI setup by editing the same workflow file and Dockerfile path that are now deleted here.

Suggested reviewers

• bielj
• spmeisburger
• saada

Poem

🐰 Docker containers fade away,
No more images in the bay,
Conda's path remains pristine,
Simpler workflows, lean and clean! 🥕

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title accurately describes the main change: reverting Docker-related files and configurations that were previously added in PR #57.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch revert-57-jlee-org-launch

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