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Updates to CIF preparation post grid search #103

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Updates to CIF preparation post grid search #103

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b488571
Changes to CIF patching script: 1/ set the seq id to what it is in th…
marcuscollins Feb 25, 2026
fedf668
put back deleted pixi.lock
marcuscollins Feb 26, 2026
7de56bf
feat(typechecking): migrate from pyright to ty
k-chrispens Feb 20, 2026
eabcebc
fix(ty): add tool section for ty
k-chrispens Feb 20, 2026
5bce0f1
addressing CodeRabbit f/b on PR 103
marcuscollins Feb 26, 2026
1901f79
Actually use argument --input-pdb-pattern
marcuscollins Feb 26, 2026
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18 changes: 9 additions & 9 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -32,27 +32,27 @@ repos:

- repo: local
hooks:
- id: pyright-boltz
name: pyright (boltz environment)
entry: bash -c 'pixi run -e boltz-dev pyright "$@"' --
- id: ty-boltz
name: ty (boltz environment)
entry: bash -c 'pixi run -e boltz-dev ty check "$@"' --
language: system
types: [python]
pass_filenames: true
exclude: (real_space_density|protenix|rf3|rfd3)
priority: 50

- id: pyright-rf3
name: pyright (rf3 environment)
entry: bash -c 'pixi run -e rf3-dev pyright "$@"' --
- id: ty-rf3
name: ty (rf3 environment)
entry: bash -c 'pixi run -e rf3-dev ty check "$@"' --
language: system
types: [python]
pass_filenames: true
files: (rf3|rfd3)
priority: 50

- id: pyright-protenix
name: pyright (protenix environment)
entry: bash -c 'pixi run -e protenix-dev pyright "$@"' --
- id: ty-protenix
name: ty (protenix environment)
entry: bash -c 'pixi run -e protenix-dev ty check "$@"' --
language: system
types: [python]
pass_filenames: true
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