turbo-picard v0.1.3

turbo-picard v0.1.3

Public-release hardening release for the current turbo-picard evidence set.

Highlights

• Adds doctor and explain utility commands to make runtime/fallback state and native command coverage easier to audit.
• Tightens CollectWgsMetrics parity against Picard 3.4.0, including default BQ histogram behavior and theoretical sensitivity sampling behavior.
• Keeps the full benchmark suite at 32/32 passing commands. Latest local benchmark run showed median speedup 29.61x and geometric mean speedup 28.13x against Picard, compared with saved public values of 26.82x and 26.74x.
• Removes internal notes, host-specific benchmark runners, and generated evidence work products from the public tree while preserving compact public evidence metadata.
• Refreshes locked transitive crate versions so cargo test --workspace --locked resolves cleanly against the current crates.io index.

Bioconda

This release is linked to the pending Bioconda submission:

• bioconda/bioconda-recipes#65922

The public repo includes updated Bioconda recipe metadata for v0.1.3 and source archive SHA-256:

5aa23e085628114c168ddf9e7df94b5762769c3e6aed2b571eae136d380b0b28

Verification

• cargo test --workspace --locked
• python3 -m pytest tools
• release verifier chain including benchmark evidence, parity docs, real-data evidence, site/readme links, release versions, and Bioconda recipe checks
• python3 tools/bioconda_release_preflight.py