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v0.1.5

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@dnncha dnncha released this 16 Jun 15:30
v0.1.5
4bac5cb

v0.1.5

Scientific correctness and release maintenance update.

Fixes

  • Fix WGS overlap bitmap lookups so mate-overlap exclusion checks the exact locus bit instead of any lower bit in the word.
  • Report real CollectGcBiasMetrics MEAN_BASE_QUALITY values in detail rows for both ALL and UNIQUE read sets.
  • Treat SAM SEQ=* and QUAL=* as missing values in SAM-text metrics collectors instead of counting the literal * sentinel as biological data or a base quality.
  • Recompute ValidateSamFile NM expectations correctly for = and X CIGAR operators.
  • Treat empty SAM read-group PL: values as missing platform values in SAM-text validation.

Release checks

  • cargo test --workspace
  • Benchmark evidence verifiers: log evidence, suite coverage, thresholds, README evidence, and site evidence.
  • Real-data release evidence verifier.
  • PyPI wheel and sdist built locally and passed twine check; wheel smoke-tested with turbo-picard --version, picard --version, and AccelerationStatus --help.
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