Computational Biologist | Single-cell & Multiome Pipelines (Nextflow, R, scVI) | PhD Cell Biology | Postdoc @rutgers
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Rutgers University
- Newark, NJ
- https://sites.rutgers.edu/astrof-lab/people/gideon-obeng/
- in/gideon-obeng-20622030
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mesp1
mesp1 PublicDevelopmental atlas pipeline integrating Mesp1-lineage scRNA-seq across four mouse embryonic timepoints (E8.0-E10.5). Nextflow DSL2 + Seurat + fastMNN.
R
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mouse-brain-e18
mouse-brain-e18 PublicSingle-cell multiome (RNA + ATAC) analysis pipeline applied to E18 mouse brain. Nextflow DSL2 + Seurat v5 + Signac with WNN integration. 13 cell types resolved, ATAC coverage tracks for lineage mar…
R
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tbx1
tbx1 PublicFour-phase scRNA-seq pipeline characterizing Tbx1 conditional knockout in cardiopharyngeal progenitors. Nextflow DSL2 + Seurat + scVI + DESeq2 + clusterProfiler.
R
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