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GUI Overview
duceppemo edited this page Nov 3, 2026
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The graphical interface is intended for interactive analysis and result review.
The GUI lets users select:
- input FASTA/FASTQ file or directory
- output directory
- primer FASTA file
- number of worker threads
- allowed primer mismatches
- BLAST e-value
- maximum amplicon length in bp (default 5000; 0 disables the limit)
The GUI uses the default 3'-end strictness (perfect match over the last 5 primer bases). The additional --3p-window/--3p-penalty and --min-length knobs are available through the command-line interface.
After the inputs are selected, click Run to start the analysis.
The application displays progress and log output during the run.
On Linux, starting the launcher from a terminal is recommended because startup messages and errors are also visible in the console.
After a run finishes, the GUI can provide actions such as:
- opening report files
- opening previous run folders
- viewing synthetic gel images
The synthetic gel viewer displays consolidated report results as gel-like bands. See Synthetic Gel Visualizer.