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Using the scripts
aspides-js edited this page May 17, 2023
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- Ensure data to be processed/analysed is in the correct directory structure (see Directory structure).
- Create folder in
scripts/<path/to/modality>/logFiles/with your username. - Read the READMEs - within each
scripts/<path/to/modality>folder there is a README containing all the information for using the scripts.
Briefly, jobs should be submitted from the scripts/sequencing-OR-array/ folder on the command line using the format:
sbatch <path/to/job/submission/script> <data-modality>
If the job is an array, numbers should be zero-based: --array=0-<number of batch jobs>
If you have any problems using the scripts, please see Troubleshooting, contact j.m.shields@exeter.ac.uk or post an issue.